View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_46 (Length: 323)
Name: NF1158_high_46
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 36 - 276
Target Start/End: Original strand, 55447656 - 55447896
Alignment:
| Q |
36 |
aattaaccatctttgagcatttcaagtgtttaactatgtaatctatagcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagac |
135 |
Q |
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| T |
55447656 |
aattaaccatctttgagcatttcaagtgtttaactatgtaatctatagcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaataggcagagac |
55447755 |
T |
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| Q |
136 |
gtgggatgatgcagttgcttaaagggtagaaatgaaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttgggg |
235 |
Q |
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| T |
55447756 |
gtggggtgatgcagttacttaaagggtagaaatgaaattttgtgacatttaatggatgttaaccgctgggaataagtgattcccatcctttgggttggga |
55447855 |
T |
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| Q |
236 |
ataaaaaatgggataatagttgaaaataattatcgggtata |
276 |
Q |
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| T |
55447856 |
ataaaaaatgggataatagttgaaaataattatcgggtata |
55447896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 287
Target Start/End: Complemental strand, 41415920 - 41415704
Alignment:
| Q |
72 |
tgtaatctatagcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagacgtgggatg--atgcagttgcttaaagggtagaaatg |
169 |
Q |
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| T |
41415920 |
tgtaatttgtagcaaaacctgtgtaaagacaagaagaaaacgtaacacataagtaggtagaaacgtgggatgccatgcggttac--aaggggtagaaatg |
41415823 |
T |
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| Q |
170 |
aaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggata--atagttgaaaataatta |
267 |
Q |
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| T |
41415822 |
aacttttgagatatt-aatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaataaaaaatgggagaatatagttaaaaataatta |
41415724 |
T |
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| Q |
268 |
tcgggtataatttattcctt |
287 |
Q |
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| T |
41415723 |
ccgggtataattaattcctt |
41415704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 41418302 - 41418423
Alignment:
| Q |
159 |
gggtagaaatgaaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggata--atagtt |
256 |
Q |
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||||||||||||| ||||| || ||| ||||||||||||| | | ||||||||| ||||||||||||| |||||| |||||| |||||||| |||||| |
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| T |
41418302 |
gggtagaaatgaacttttgagatatt-aatggatgttaactgcttggaataagtcattcccatcctttctgttgggaataaaatatgggataatatagtt |
41418400 |
T |
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| Q |
257 |
gaaaataattatcgggtataatt |
279 |
Q |
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| T |
41418401 |
aaaaataattaccggatataatt |
41418423 |
T |
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