View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_high_55 (Length: 307)
Name: NF1158_high_55
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_55 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 307
Target Start/End: Original strand, 2289358 - 2289670
Alignment:
| Q |
3 |
agcagcatcacagaaaagttaagggcactaagtattgataaagtgcatataagaacctaactaccaagctttgcnnnnnnnnn-----gaagcaccaagt |
97 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||| |||| |
|
|
| T |
2289358 |
agcagcaccacaaaaaagttaagggcacaaagtattgataaagtgcatataaaaagcttactaccaagctttgcaacaaaaaaaaaaagaagcactaagt |
2289457 |
T |
|
| Q |
98 |
attaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaattgtttgc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2289458 |
attaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaactgtttgc |
2289557 |
T |
|
| Q |
198 |
tattcatcacttgctgaaatttcattcttaccatgaataatatcttcaacatt---actcactttctcagcaccttcgctttcctctgcgccggatttct |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289558 |
tattcatcacttgctgaaatttcattcttaccattaataatatcttcaacattgagactcactttctcagcaccttcgctttcctctgcgccggatttct |
2289657 |
T |
|
| Q |
295 |
cttgcttataact |
307 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2289658 |
cttgcttataact |
2289670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University