View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_high_57 (Length: 306)

Name: NF1158_high_57
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_high_57
NF1158_high_57
[»] chr5 (1 HSPs)
chr5 (30-306)||(35937009-35937294)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 35937294 - 35937009
Alignment:
Q  30 cattgttgttatccattatttataatccctcttttactgttttgtaaattaatatatagattttttatgaggagtggttacgtttccatccactaatttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35937294 cattgttgttatccattatttataatccctcttttactgttttgtaaattaatatatagattttttatgaggagtggttacgtttccatccactaatttg 35937195  T
Q  130 gtcgcgttggtttggaaattaagtaaaactttgattgtaannnnnnncttgag-------tctatagtattacgaagttggttgggtttgcatagttttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||       |||||||||||||| |||||||||||||||||||||||||    
T  35937194 gtcgcgttggtttggaaattaagtaaaactttgattgtaatttttttcttgagtctatactctatagtattacgtagttggttgggtttgcatagttttt 35937095  T
Q  223 cgttaatgatagctgggcatagttgattgaaaattaatttctttgtaattgttgtttttaac--ttcttttttcgttcaaaattca 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  35937094 cgttaatgatagctgggcatagttgattgaaatttaatttctttgtaattgttgtttttaactttttttttttcgttcaaaattca 35937009  T

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