View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_59 (Length: 299)
Name: NF1158_high_59
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 42874579 - 42874820
Alignment:
| Q |
30 |
attctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatcttaaagaaatttgtgcaacagactttccatgtgcatctgcaa |
129 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42874579 |
attctctccttatcataactcttgggaacaaaagtgactccttgttcatataaccatcttagagaaatttgtgcaacagactttccatgtgcatctgcaa |
42874678 |
T |
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| Q |
130 |
tctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgcagttaacactattccgtttgcgttgca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42874679 |
tctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgcagttaacactattccgtttgcgttgca |
42874778 |
T |
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| Q |
230 |
aaactctctaagcttcttttgttgccatgcaaggttcatctc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42874779 |
aaactctctaagcttcttttgttgccatgcaaggttcatctc |
42874820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 42883710 - 42883951
Alignment:
| Q |
30 |
attctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatcttaaagaaatttgtgcaacagactttccatgtgcatctgcaa |
129 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42883710 |
attctctccttatcataactcttgggaacaaaagtgactccttgttcatataaccatcttagagaaatttgtgcaacagactttccatgtgcatctgcaa |
42883809 |
T |
|
| Q |
130 |
tctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgcagttaacactattccgtttgcgttgca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42883810 |
tctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgcagttaacactattccgtttgcgttgca |
42883909 |
T |
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| Q |
230 |
aaactctctaagcttcttttgttgccatgcaaggttcatctc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42883910 |
aaactctctaagcttcttttgttgccatgcaaggttcatctc |
42883951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 271
Target Start/End: Complemental strand, 42890722 - 42890481
Alignment:
| Q |
30 |
attctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatcttaaagaaatttgtgcaacagactttccatgtgcatctgcaa |
129 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42890722 |
attctctccttatcataactcttgggaacaaaagtgactccttgttcatataaccatcttagagaaatttgtgcaacagactttccatgtgcatctgcaa |
42890623 |
T |
|
| Q |
130 |
tctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgcagttaacactattccgtttgcgttgca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890622 |
tctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgcagttaacactattccgtttgcgttgca |
42890523 |
T |
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| Q |
230 |
aaactctctaagcttcttttgttgccatgcaaggttcatctc |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890522 |
aaactctctaagcttcttttgttgccatgcaaggttcatctc |
42890481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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