View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_63 (Length: 288)
Name: NF1158_high_63
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 41035129 - 41035206
Alignment:
| Q |
161 |
atgtagacacatacatccatctacgtaccaccttaagaaagaaaaagattaaagtaagtggagtgatagacatgattt |
238 |
Q |
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| T |
41035129 |
atgtagacacatgcatccatctacgtaccaccttaagagagaaaaagattaaagtaagtggagtgatagacatgattt |
41035206 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 41034980 - 41035067
Alignment:
| Q |
67 |
agtcttttggttaaaagcaagtagacatagtttggtaactcactccttaacgtttttatgtgagagtaagttagtaaactcatatgtg |
154 |
Q |
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| T |
41034980 |
agtcttttggttaaaagcaagtagacatagtctgataacttactccttaatgttcttatgtgagagtaagttaataaactcatatgtg |
41035067 |
T |
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