View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_64 (Length: 284)
Name: NF1158_high_64
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_64 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 29920230 - 29920044
Alignment:
| Q |
39 |
cagagacctaccatcagtatttactgcctcgtggatttgatgaagtgccacttgtagaaccaactcttggtgtgttgggaggcttccnnnnnnnncttct |
138 |
Q |
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| T |
29920230 |
cagagacctaccatcagtatttactgccccgtggatttgatgaagtgccacttgtagaaccaactcttggtgtgttgggaggctgcctttttt--cttct |
29920133 |
T |
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| Q |
139 |
tattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattcttggtttcaattccttcaagtttttct |
227 |
Q |
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| T |
29920132 |
tattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattcttggtttcaattccttcaagtttttct |
29920044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 29454196 - 29454118
Alignment:
| Q |
135 |
ttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattcttggtttcaattc |
213 |
Q |
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| T |
29454196 |
ttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattc |
29454118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 29922086 - 29922005
Alignment:
| Q |
135 |
ttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattcttggtttcaattcctt |
216 |
Q |
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| T |
29922086 |
ttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaattcctt |
29922005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 29867226 - 29867294
Alignment:
| Q |
148 |
aaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattcttggtttcaattcctt |
216 |
Q |
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| T |
29867226 |
aaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattcctt |
29867294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 3557703 - 3557753
Alignment:
| Q |
135 |
ttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaatt |
185 |
Q |
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| T |
3557703 |
ttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatt |
3557753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 3561051 - 3561001
Alignment:
| Q |
135 |
ttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaatt |
185 |
Q |
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| T |
3561051 |
ttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatt |
3561001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 3625619 - 3625695
Alignment:
| Q |
41 |
gagacctaccatcagtatttactgcctcgtggatttgatgaagtgccacttgtagaaccaactcttggtgtgttggg |
117 |
Q |
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| T |
3625619 |
gagacatacaatcactattggctgcctcgtggatttgataaggtgcctcctatagaaccaaatgttggtgtgttggg |
3625695 |
T |
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