View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_77 (Length: 251)
Name: NF1158_high_77
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_77 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 1598904 - 1598683
Alignment:
| Q |
30 |
tgtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataactagtgaaataaaccgaactttacatatatgctacga |
129 |
Q |
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| T |
1598904 |
tgtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataactagtgaaataaaccgaactttacatatatgctacga |
1598805 |
T |
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| Q |
130 |
cctaagttacatggtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatccg |
229 |
Q |
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| T |
1598804 |
cctaagttacatagtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatcag |
1598705 |
T |
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| Q |
230 |
tgtttctgaaagcatcaaatta |
251 |
Q |
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| T |
1598704 |
tgtttctgaaagcatcaaatta |
1598683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 41222764 - 41222985
Alignment:
| Q |
30 |
tgtgcaaccaaaaaacaatgtattgtttctagaacaagcgtgacacaaaatatactactataactagtgaaataaaccgaactttacatatatgctacga |
129 |
Q |
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| T |
41222764 |
tgtgcaacccaataataaagtattgttcctagaaccagtttgacacaacacatactactgtaaccagtgaaatagaatgatctctacatatatgctacaa |
41222863 |
T |
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| Q |
130 |
cctaagttacatggtaacaggacatagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatccg |
229 |
Q |
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| T |
41222864 |
cataagctacatagtaccacaacatagtcaccaatatgtcatgtcttctccatgttgaatcctgcaaagttggatgaaatcaaataacaagtgacatcgg |
41222963 |
T |
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| Q |
230 |
tgtttctgaaagcatcaaatta |
251 |
Q |
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| T |
41222964 |
tgcttctgaaggcatcaaatta |
41222985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 16234133 - 16234035
Alignment:
| Q |
153 |
atagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatccgtgtttctgaaagcatcaaatta |
251 |
Q |
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| T |
16234133 |
atagtcaccaatatgtcatgtcttctccatgttgaatcctgcaaagttggatgaaatccaataacaagtgacatcggtgcttctgaaggcatcaaatta |
16234035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 41217096 - 41217169
Alignment:
| Q |
154 |
tagtcaacaatatgtcatgtcttctccatgttaaatcctgcaaagatggatgaaatcaagtaacaagtgatatc |
227 |
Q |
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|||||| |||||||||||||||||| ||| | |||||||||| | |||||||||||||||||||| ||||||| |
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| T |
41217096 |
tagtcaccaatatgtcatgtcttcttcattgtgaatcctgcaaggttggatgaaatcaagtaacaattgatatc |
41217169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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