View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_8 (Length: 561)
Name: NF1158_high_8
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 15050248 - 15050388
Alignment:
| Q |
42 |
cattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagtt |
141 |
Q |
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| T |
15050248 |
cattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagtt |
15050347 |
T |
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| Q |
142 |
tagttagatttttcacaaatcttacactcaagttaacccac |
182 |
Q |
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| T |
15050348 |
tagttagatttttcacaaatcttacactcaagttaacccac |
15050388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 473 - 553
Target Start/End: Original strand, 15050388 - 15050468
Alignment:
| Q |
473 |
ctcaacactttccgtcaaacacagataactctaatgggtgttcaacacatgatttagttctctaatccatcctcctatgat |
553 |
Q |
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| T |
15050388 |
ctcaacactttccgtcgagcacagataactctaatgggtgttcaacacatgatttagttctctaatccatcctcctatgat |
15050468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 14775412 - 14775534
Alignment:
| Q |
42 |
cattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagtt |
141 |
Q |
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| T |
14775412 |
cattcacaccttcaggcaatttttttcgcacaaccttctttacaaccaaaatttcggatggttgaaaaggagcattaaaacatttaacctgtagagagtt |
14775511 |
T |
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| Q |
142 |
tagttagatttttcacaaatctt |
164 |
Q |
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| T |
14775512 |
tagttagatttttcacaaatctt |
14775534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 17882785 - 17882927
Alignment:
| Q |
42 |
cattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagtt |
141 |
Q |
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| T |
17882785 |
cattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacagcctgtagatagta |
17882884 |
T |
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| Q |
142 |
tagttagatttttcacaaatcttacactcaagttaacccacca |
184 |
Q |
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| T |
17882885 |
ttgttagaagtttcacaaatcttatactaaagttaacctacca |
17882927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 15017479 - 15017598
Alignment:
| Q |
42 |
cattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagtt |
141 |
Q |
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| T |
15017479 |
cattcacgccttctgacaaattctttttcacaacctcctttacatccaaaatttcatgtggcttcagaggagcattgaaacatctaacctgtagatagtt |
15017578 |
T |
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| Q |
142 |
tagttagatttttcacaaat |
161 |
Q |
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| T |
15017579 |
tagttagattttgcacaaat |
15017598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 36874324 - 36874192
Alignment:
| Q |
47 |
acaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagtttagtt |
146 |
Q |
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|||||||||||||| || ||||||||||||||||||| || |||||| | ||| || || || |||||||||| |||||||| ||||||| ||| |
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| T |
36874324 |
acaccttcagacaatttatcttgcacaaccttctttacacccacaatttctgctggttgcagaggagcgttgaaacatctaacctgtatatagtttggtt |
36874225 |
T |
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| Q |
147 |
agatttttcacaaatcttacactcaagttaacc |
179 |
Q |
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| T |
36874224 |
agatttttcacaaatcttatacacatgttaacc |
36874192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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