View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_81 (Length: 228)
Name: NF1158_high_81
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_81 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 55095311 - 55095177
Alignment:
| Q |
23 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtgccctgagca |
122 |
Q |
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| T |
55095311 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtgccctgagca |
55095212 |
T |
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| Q |
123 |
ggcaaaccaagagcagcaccgatgtcagcaacagc |
157 |
Q |
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| T |
55095211 |
ggcaaaccaagagcagcaccgatgtcagcaacagc |
55095177 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 28896807 - 28896877
Alignment:
| Q |
87 |
tagatgtgatcagagtcaggagtagtgccctgagcaggcaaaccaagagcagcaccgatgtcagcaacagc |
157 |
Q |
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| T |
28896807 |
tagatgtgatcagaatcaggattagtgcctttagcaggtaaaccaagagcagaaccaatatcagaaacagc |
28896877 |
T |
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