View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_82 (Length: 215)
Name: NF1158_high_82
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_82 |
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Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 4701894 - 4701953
Alignment:
| Q |
21 |
aaacatacctgtaaacaattaagcactgaacgcatcatcaaaaccaacacgtcagacaca |
80 |
Q |
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| T |
4701894 |
aaacatacttgttaacaattaagcacagaacgcggcatcaaaaccaatacgtcagacaca |
4701953 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 4701965 - 4702016
Alignment:
| Q |
75 |
gacacattttcaacagaagtgtcgtgcttgctgcaacttgtatttaaaataaagag |
130 |
Q |
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| T |
4701965 |
gacacattttcaacagaagtgtcgtgcta----caacttgtatttaaaataaagag |
4702016 |
T |
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