View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_1 (Length: 734)
Name: NF1158_low_1
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 337 - 722
Target Start/End: Complemental strand, 45421735 - 45421347
Alignment:
| Q |
337 |
tattcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaattcaaaaatatatttcatcgaattcatttgtaatttcatttacgt |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45421735 |
tattcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaactcaaaaatatatttcatcgaattcatttgtaatttcatttatgt |
45421636 |
T |
|
| Q |
437 |
gacatttgtaatttcatttatcagatgaaaattttaagaaaattttttgttgataatatttgatgtccatgaca----gcaacaaatataaatggatttc |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45421635 |
gacatttgtaatttcatttatcagatgaaaattttaagaaaaaaatttgataataatatttgatgtccatgacacttagcaacaaatataaatggattta |
45421536 |
T |
|
| Q |
533 |
tctgnnnnnnngtctctaacttttcatctatttcaatttttactaattctaatttgtttcacccatcaaattgataggccatggcaagaacaatgattgt |
632 |
Q |
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| T |
45421535 |
tct-tttttttgtctctaaattttcatctatttcaatttttactaattctaatttgtttcacccatcaaattgataggccatggcaagaacaatgattgt |
45421437 |
T |
|
| Q |
633 |
gtctacaaatcaaatgatagatagatggactagccagataaaattaggcaaacatgaaatcgacatggagaaagaaattatagcaacagc |
722 |
Q |
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| T |
45421436 |
gtctacaaatcaaatgatagatagatggactagccagataaaattaggcaaacatgaaatcgacgtggagaaagaaattatagcaacagc |
45421347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 340
Target Start/End: Complemental strand, 45422121 - 45421809
Alignment:
| Q |
30 |
cgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaatatataagcac--atataattttgacctttataattg |
127 |
Q |
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| T |
45422121 |
cgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaatatataagcacgtatataattttgacctttatgattg |
45422022 |
T |
|
| Q |
128 |
tggctttcaagggaagaatgttcacgtattccatatatgtatggtcacccattaatttggtagaattacgatgtgttatagtaattttcaaaaataaaac |
227 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45422021 |
tggctttcaagggaagaatgttcacgtattgcatatatgtatggtcacccattaatttggtagaattacgatgtgttatagtaattttcaaaaataaaac |
45421922 |
T |
|
| Q |
228 |
taagttttagtacttggtggagagnnnnnnnttagaatttagagtttaaaaatacaataatgctagatcaagcgaattattcatccagaatttatcccga |
327 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45421921 |
taagtttaagtacttggtggagaaaaaaaaaatagaatttagagtttaaaaatacaataatgctagatcaaacgaattattcatccagaatttatcccga |
45421822 |
T |
|
| Q |
328 |
aaacatttctatt |
340 |
Q |
| |
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||||||||||||| |
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| T |
45421821 |
aaacatttctatt |
45421809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 625 - 714
Target Start/End: Complemental strand, 45412344 - 45412255
Alignment:
| Q |
625 |
atgattgtgtctacaaatcaaatgatagatagatggactagccagataaaattaggcaaacatgaaatcgacatggagaaagaaattata |
714 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| |
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| T |
45412344 |
atgattgagtctacaaatcaaatgatagatagatggactagccaaataaactttggcaaccatgaaatcgacatggagaaagaaattata |
45412255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 45412719 - 45412669
Alignment:
| Q |
29 |
acgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggt |
79 |
Q |
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| T |
45412719 |
acgtcaccgtcacattgttgcaccagcattcaatccccttaacctcaaggt |
45412669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 340 - 722
Target Start/End: Complemental strand, 26836800 - 26836414
Alignment:
| Q |
340 |
tcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaattcaaaaatatatttcatcgaattcatttgtaatttcatttacgtgac |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26836800 |
tcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaattcaaaaatatatttcatcgaattcatttgtaatttcatttacgtgac |
26836701 |
T |
|
| Q |
440 |
atttgtaatttcatttatcagatgaaaattttaagaaaattttttgttgataatatttgatgtccatgac----agcaacaaatataaatggatttctct |
535 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
26836700 |
atttgtaatttcatttatcagatgaaaattttaagaaaaaaatttgttaataatatttgatgtccatgacacatagcaacaaatataaatggatttatct |
26836601 |
T |
|
| Q |
536 |
gnnnnnnngtctctaacttttcatcta--tttcaatttttactaattctaatttgtttcacccatcaaattgataggccatggcaagaacaatgattgtg |
633 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26836600 |
--ttctttgtctctaaattttcatctatttttcaatttttactaattctaatttgtttcacacatcaaattgataggccatggcaagaacaatgattgtg |
26836503 |
T |
|
| Q |
634 |
tctacaaatcaaatgatagatagatggactagccagataaaattaggcaaacatgaaatcgacatggagaaagaaattatagcaacagc |
722 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26836502 |
tctacaaatcaaatgatagatagatggactagccagataaaattaggcaaacatgaaatcgacatagagaaagaaattatagcaacagc |
26836414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 26836973 - 26836816
Alignment:
| Q |
30 |
cgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctc----------------aaatatataagcacatata--att |
111 |
Q |
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||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
26836973 |
cgtcaccgcaacattgttgcaccatcattcaatcctcttaacctcaaggttctctctctctctctctctctctctcaaatatataagcacatatataatt |
26836874 |
T |
|
| Q |
112 |
ttgacctttataattgtggctttcaagggaagaatgttcacgtattccatatatgtat |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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|
| T |
26836873 |
ttgacctttataattgtggctttcaagggaagaatgttcatgtattgcatatacgtat |
26836816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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