View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_10 (Length: 556)

Name: NF1158_low_10
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_10
NF1158_low_10
[»] chr2 (15 HSPs)
chr2 (387-461)||(26841695-26841769)
chr2 (387-461)||(2639354-2639428)
chr2 (387-461)||(18296594-18296668)
chr2 (387-457)||(2638933-2639003)
chr2 (387-461)||(7591722-7591796)
chr2 (387-461)||(18296184-18296257)
chr2 (387-456)||(7591313-7591382)
chr2 (387-461)||(26842110-26842184)
chr2 (252-297)||(26841860-26841905)
chr2 (252-297)||(18296349-18296394)
chr2 (396-460)||(29230454-29230518)
chr2 (396-460)||(29343753-29343817)
chr2 (252-297)||(2639097-2639142)
chr2 (252-297)||(7591583-7591628)
chr2 (387-439)||(31641603-31641655)
[»] chr8 (11 HSPs)
chr8 (387-461)||(9823233-9823307)
chr8 (392-461)||(13026743-13026812)
chr8 (387-461)||(13027154-13027227)
chr8 (387-461)||(39723510-39723584)
chr8 (387-461)||(22851498-22851572)
chr8 (387-461)||(39723920-39723994)
chr8 (393-461)||(9822856-9822924)
chr8 (252-291)||(9823097-9823136)
chr8 (252-297)||(13027017-13027062)
chr8 (412-456)||(22851883-22851927)
chr8 (252-285)||(22851767-22851800)
[»] chr4 (14 HSPs)
chr4 (387-461)||(36095924-36095998)
chr4 (387-461)||(36096347-36096421)
chr4 (387-461)||(50679296-50679370)
chr4 (387-461)||(50678887-50678960)
chr4 (387-461)||(43051124-43051198)
chr4 (387-446)||(45829116-45829175)
chr4 (387-446)||(45830070-45830129)
chr4 (387-461)||(43050715-43050789)
chr4 (387-461)||(47219077-47219151)
chr4 (391-446)||(11529291-11529346)
chr4 (396-460)||(56505802-56505866)
chr4 (252-291)||(43050984-43051023)
chr4 (252-291)||(47218842-47218881)
chr4 (252-297)||(50679051-50679096)
[»] chr1 (9 HSPs)
chr1 (387-461)||(6002345-6002419)
chr1 (387-461)||(48190850-48190924)
chr1 (387-461)||(48191257-48191331)
chr1 (387-461)||(49284927-49285001)
chr1 (387-461)||(49284517-49284590)
chr1 (387-457)||(6002765-6002835)
chr1 (252-297)||(48191016-48191061)
chr1 (252-297)||(49284682-49284727)
chr1 (252-297)||(6002511-6002556)
[»] scaffold0328 (3 HSPs)
scaffold0328 (387-461)||(6667-6741)
scaffold0328 (387-456)||(6264-6333)
scaffold0328 (252-297)||(6530-6575)
[»] chr7 (7 HSPs)
chr7 (387-461)||(13863421-13863495)
chr7 (387-461)||(44599597-44599671)
chr7 (387-461)||(44600008-44600081)
chr7 (387-446)||(13863830-13863889)
chr7 (387-446)||(8643639-8643698)
chr7 (252-297)||(44599871-44599916)
chr7 (252-297)||(13863588-13863633)
[»] chr6 (3 HSPs)
chr6 (387-461)||(33829508-33829582)
chr6 (387-461)||(33829098-33829171)
chr6 (252-297)||(33829263-33829308)
[»] chr5 (6 HSPs)
chr5 (387-461)||(18817060-18817134)
chr5 (387-457)||(18817483-18817553)
chr5 (387-456)||(11351301-11351370)
chr5 (396-446)||(31570439-31570489)
chr5 (252-297)||(11351061-11351106)
chr5 (252-297)||(18817226-18817271)
[»] chr3 (2 HSPs)
chr3 (396-446)||(1928315-1928365)
chr3 (393-439)||(28702403-28702449)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 26841769 - 26841695
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
26841769 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaattcatggggggcctc 26841695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 2639354 - 2639428
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
2639354 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcgctaaaacacatggggggcctc 2639428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 18296594 - 18296668
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
18296594 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 18296668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 2639003 - 2638933
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatgggggg 457  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
2639003 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacgtgggggg 2638933  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 7591722 - 7591796
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||    
7591722 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacgtagggggcctc 7591796  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 18296257 - 18296184
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
18296257 cacacgtggcaaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctc 18296184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 7591382 - 7591313
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggg 456  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||    
7591382 cacatgtggcaaacattaaatgaagacacgccatcaaaatcagacacatcatcgctaaaacacatggggg 7591313  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 26842110 - 26842184
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||    
26842110 cacacgtggaaaacattaaatgaagacacgtcatcaaaatcatacacatcatcactaaaacacatggggggcctc 26842184  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 26841905 - 26841860
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
26841905 aacaaaaaatatcgattaccggttccgttcatggtagagctgtcaa 26841860  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 18296394 - 18296349
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
18296394 aacaaaaaatatcgattactggttccgttcatggtagagctgtcaa 18296349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 29230454 - 29230518
Alignment:
396 caaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcct 460  Q
    |||||||||||||||||||| ||||||||||||||||  ||||| |||||||  ||| |||||||    
29230454 caaacattaaatgaagacacatcatcaaaatcagacatgtcatcactaaaatatatgaggggcct 29230518  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 29343753 - 29343817
Alignment:
396 caaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcct 460  Q
    |||||||||||||||||||| ||||||||||||||||  ||||| |||||||  ||| |||||||    
29343753 caaacattaaatgaagacacatcatcaaaatcagacatgtcatcactaaaatatatgaggggcct 29343817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 2639142 - 2639097
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||    
2639142 aacaaaaaatatcgattaccggttctgttcatggcagagctgtcaa 2639097  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 7591583 - 7591628
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||    
7591583 aacaaaaaatatcgattaccggttctgttcatggcagagctgtcaa 7591628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 31641655 - 31641603
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatc 439  Q
    ||||| || |||| |||||||||| ||||||||||||||||| ||| ||||||    
31641655 cacatatgacaaaaattaaatgaatacacgtcatcaaaatcaaacagatcatc 31641603  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 9823233 - 9823307
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
9823233 cacacgtggcaaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaattcatggggggcctc 9823307  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 13026812 - 13026743
Alignment:
392 gtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
13026812 gtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 13026743  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 13027154 - 13027227
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
13027154 cacacgtggcaaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctc 13027227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 39723584 - 39723510
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  |||||||||||||    
39723584 cacatatggcaaacattaaatgaagacacgtcatcaaaaacagacacatcatcactaaaacacatggggggcctc 39723510  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 22851572 - 22851498
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  ||||| |||||||    
22851572 cacacgtggcaaacattaaatgaacacacgtcatcaaaatcagacacatcatcactaaaacacatggagggcctc 22851498  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 39723920 - 39723994
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||| |||||||    
39723920 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcaaacacatcatcactaaaacacatggagggcctc 39723994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 9822924 - 9822856
Alignment:
393 tggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||| ||||||    
9822924 tggcaaacattaaatgaagacacgtcatcaaaatcagacacatgatcactaaaacacatgggtggcctc 9822856  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 9823097 - 9823136
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagc 291  Q
    ||||||||||||||||||||||||||||||||||||||||    
9823097 aacaaaaaatatcgattaccggttccgttcatggtagagc 9823136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 13027017 - 13027062
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
13027017 aacaaaaaatatcgattactggttccgttcatggtagagctgtcaa 13027062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 22851883 - 22851927
Alignment:
412 acacgtcatcaaaatcagacacatcatccctaaaattcatggggg 456  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||    
22851883 acacgtcatcaaaatcagacacatcatcactaaaacacatggggg 22851927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 22851767 - 22851800
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatgg 285  Q
    |||||||||||||||||||||||||| |||||||    
22851767 aacaaaaaatatcgattaccggttcctttcatgg 22851800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 36095998 - 36095924
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
36095998 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacatggggggcctc 36095924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 36096347 - 36096421
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
36096347 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 36096421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 50679296 - 50679370
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
50679296 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 50679370  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 50678960 - 50678887
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
50678960 cacacgtggcaaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctc 50678887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 43051124 - 43051198
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||  |||||||||||||    
43051124 cacatatggtaaacattaaatgaagacacgtcatcaaaaacagacacatcatcactaaaacacatggggggcctc 43051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 45829175 - 45829116
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
45829175 cacacgtggcaaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaa 45829116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 45830070 - 45830129
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
45830070 cacacgtggcaaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaa 45830129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 43050789 - 43050715
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| ||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||| |||||||    
43050789 cacacgtgacaaacattaaatgaagacacgtcatcaaaatcaaacacatcatcactaaaacacatggagggcctc 43050715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 47219077 - 47219151
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||||  ||||| |||||||    
47219077 cacacgtggcaaacattaaatgaggacacgtcatcaaaatcaaacacatcatcactaaaacacatggagggcctc 47219151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 11529346 - 11529291
Alignment:
391 tgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||    
11529346 tgtggcaaacattaaatgaagacacctaatcaaaatcagacacatcatcactaaaa 11529291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 56505866 - 56505802
Alignment:
396 caaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcct 460  Q
    |||| ||||||||||| ||| ||||||| ||||||||||||||| ||||||  ||||||||||||    
56505866 caaaaattaaatgaaggcacatcatcaatatcagacacatcatcactaaaacacatggggggcct 56505802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 43050984 - 43051023
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagc 291  Q
    |||||||||||||||||||||||||||||||||| |||||    
43050984 aacaaaaaatatcgattaccggttccgttcatggcagagc 43051023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 47218881 - 47218842
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagc 291  Q
    |||||||||||||||||||||||||||||||||| |||||    
47218881 aacaaaaaatatcgattaccggttccgttcatggcagagc 47218842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 50679096 - 50679051
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||    
50679096 aacaaaaaatatcgattattggttccgttcatggtagagctgtcaa 50679051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 6002419 - 6002345
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
6002419 cacacgtggcaaacattaaatgaaaacacgtcatcaaaatcagacacatcatcactaaaattcatggggggcctc 6002345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 48190924 - 48190850
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
48190924 cacaagtggcaaacattaaattaagacacgtcgtcaaaatcagacacatcatcactaaaattcatggggggcctc 48190850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 48191257 - 48191331
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
48191257 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 48191331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 49284927 - 49285001
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
49284927 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 49285001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 49284590 - 49284517
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
49284590 cacacgtggcaaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctc 49284517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 6002765 - 6002835
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatgggggg 457  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||    
6002765 cacacgtggcaaacattaaatgaagacacatcatcaaaatcagacacatcatcactaaaacacatgggggg 6002835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 48191061 - 48191016
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
48191061 aacaaaaaatatcgattaccggttccgtacatggtagagctgtcaa 48191016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 49284727 - 49284682
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
49284727 aacaaaaaatatcgattactggttccgttcatggtagagctgtcaa 49284682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 6002556 - 6002511
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||    
6002556 aacaaaaaatatcgattatcggtttagttcatggtagagcagtcaa 6002511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 6667 - 6741
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
6667 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 6741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 6333 - 6264
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggg 456  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||    
6333 cacatgtggcaaacattaaatgaagacaagtcatcaaaatcagacacatcatcactaaaacacatggggg 6264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 6530 - 6575
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||    
6530 aacaaaaaatatcgattatcggttccgttcatggcagagctgtcaa 6575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 13863495 - 13863421
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
13863495 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 13863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 44599671 - 44599597
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
44599671 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 44599597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 44600008 - 44600081
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
44600008 cacacgtggcaaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctc 44600081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 13863830 - 13863889
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
13863830 cacacgtggcaaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaa 13863889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 8643639 - 8643698
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    |||| |||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||    
8643639 cacacgtggcaaaaattaaatgaagacatgtcatcaaaatcaaacacatcatcgctaaaa 8643698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 44599871 - 44599916
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
44599871 aacaaaaaatatcgattactggttccgttcatggtagagctgtcaa 44599916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 13863633 - 13863588
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||    
13863633 aacaaaaaatatcgattatcggttccgttcatggcagagctgtcaa 13863588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 33829508 - 33829582
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
33829508 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaacacatggggggcctc 33829582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 33829171 - 33829098
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
33829171 cacacgtggcaaatattaaatgaagacacgtcatcaaaatcagacacatcatcact-aaattcatggggggcctc 33829098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 33829308 - 33829263
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||    
33829308 aacaaaaaatatcgattactggttccattcatggtagagctgtcaa 33829263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 18817134 - 18817060
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggggcctc 461  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||    
18817134 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaaatacgtggggggcctc 18817060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 18817483 - 18817553
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatgggggg 457  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
18817483 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcgctaaaacacatgggggg 18817553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 456
Target Start/End: Original strand, 11351301 - 11351370
Alignment:
387 cacatgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaattcatggggg 456  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||    
11351301 cacacgtggcaaacattaaatgaagacacgtcatcaaaatcagacacatcattactaaaacacatggggg 11351370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 31570439 - 31570489
Alignment:
396 caaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||||    
31570439 caaaaattaaatgaagacatgtcatcaaaatcagacacatcatcactaaaa 31570489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 11351106 - 11351061
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
11351106 aacaaaaaatatcgattaccggttccgttcatggcagagctgtcaa 11351061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 18817271 - 18817226
Alignment:
252 aacaaaaaatatcgattaccggttccgttcatggtagagcagtcaa 297  Q
    ||||||||||||||||||||||||  |||||||| ||||| |||||    
18817271 aacaaaaaatatcgattaccggttttgttcatggcagagctgtcaa 18817226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 1928315 - 1928365
Alignment:
396 caaacattaaatgaagacacgtcatcaaaatcagacacatcatccctaaaa 446  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||||    
1928315 caaaaattaaatgaagacacatcatcaaaatcagacacatcatcactaaaa 1928365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 28702449 - 28702403
Alignment:
393 tggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatc 439  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||    
28702449 tggcaagcattaaatgaagacatgtcattaaaatcagacacatcatc 28702403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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