View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_101 (Length: 239)
Name: NF1158_low_101
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_101 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 46808332 - 46808451
Alignment:
| Q |
120 |
gaacgtcgtcctggacaacagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaac |
219 |
Q |
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| T |
46808332 |
gaacgtcgtcctggacaacagagacctacacgcgaaggtcgttggaaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaac |
46808431 |
T |
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| Q |
220 |
gagagaaagaggagcgacaa |
239 |
Q |
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| T |
46808432 |
gtgagaaagaggagcgacaa |
46808451 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 46808098 - 46808196
Alignment:
| Q |
120 |
gaacgtcgtcctggacaacagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaa |
218 |
Q |
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| T |
46808098 |
gaacgtcgtcctggagaatggagacctccacgtggaggtcgtcaagaaggccaagaacaacgccctggacaatggagaccttcacatgaaagggaggaa |
46808196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 46808219 - 46808282
Alignment:
| Q |
121 |
aacgtcgtcctggacaacagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccc |
184 |
Q |
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| T |
46808219 |
aacgtcgtcctggacaatggagacctacacgtggaggtcgccaggaaggccaagaacaacgccc |
46808282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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