View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_108 (Length: 214)
Name: NF1158_low_108
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1133801 - 1133952
Alignment:
| Q |
1 |
tctagaggtgaagcttagattctcaaattaagtaatatgtcaattattgtgtcccaaagtaaaagacnnnnnnnnnnnnnnnn---ttaagtgaagatcc |
97 |
Q |
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| T |
1133801 |
tctataggcgaagcttagattctcaaattaagtaatatgtcaattattgtgtcccaaagtaaaagaacaaaaaaatagtaaaaaaattaagtgaagatcc |
1133900 |
T |
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| Q |
98 |
tcataaagtagtgcgttcccacgagttcaaaagacaacacaatagtataatc |
149 |
Q |
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| T |
1133901 |
tcataaagtagtgcgttcccacgagttcaaaagacaacacaataatataatc |
1133952 |
T |
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