View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_14 (Length: 530)
Name: NF1158_low_14
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 502
Target Start/End: Original strand, 12508425 - 12508901
Alignment:
| Q |
30 |
gccataatactttgaagattcttgctcaattttgctttcaatgaagcaaaagttaaactgttttttgcttcatttgtttgtggtgatgatactaatcctt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508425 |
gccataatactttgaagattcttgctcaattttgctttcaatgaagcaaaagttaaactgttttttgcttcatttgtttgtggtgatgatactaatcctt |
12508524 |
T |
|
| Q |
130 |
gatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagcattttctccgcgtaaagctcgagcagcttcgtcgtaagc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508525 |
gatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagcattttctccgcgtaaagctcgagcagcttcgtcgtaagc |
12508624 |
T |
|
| Q |
230 |
tcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatctacctgatggcctttgt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508625 |
tcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatctacctgatggcctttgt |
12508724 |
T |
|
| Q |
330 |
ctcacaccaatgaatcttctcatgtttggnnnnnnngatttggttatgttgtttgtagcagaagcatattttgtagcttcagttccagacataa-nnnnn |
428 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508725 |
ctcacaccaatgaatcttctcatgttcggtttttttgatttggttatgttgtttgtagcagaagcatattttgtagcttcagttccagacataatttttt |
12508824 |
T |
|
| Q |
429 |
nnnngcttagattagctnnnnnnnttggt---tttggatttgagtgttgttttggaagtggagtttatattattgga |
502 |
Q |
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| T |
12508825 |
ttttgcttagattggctaaaaaaattgttgagtttggatttgagtgttgttttggaagtggagtttatattattgga |
12508901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 33274267 - 33274393
Alignment:
| Q |
213 |
gcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatc |
312 |
Q |
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|||||||| || ||||||| ||| ||||| || | ||| ||| | ||||||||||| | ||||| | |||| || ||||||||||||||||||||||| |
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| T |
33274267 |
gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc |
33274366 |
T |
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| Q |
313 |
tacctgatggcctttgtctcacaccaa |
339 |
Q |
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| T |
33274367 |
tccctgatggcctttgcctaacaccaa |
33274393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 3160268 - 3160220
Alignment:
| Q |
291 |
tctttgatctcagctacccatctacctgatggcctttgtctcacaccaa |
339 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3160268 |
tcttttatctcagctacccatcttcctgatggcctttgtctcacaccaa |
3160220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 46024103 - 46024054
Alignment:
| Q |
285 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
334 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
46024103 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgcctcac |
46024054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 46265264 - 46265313
Alignment:
| Q |
285 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
334 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
46265264 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgcctcac |
46265313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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