View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_16 (Length: 523)
Name: NF1158_low_16
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_16 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 9696227 - 9695905
Alignment:
| Q |
30 |
atataagcacgatgcaacatacaacatagcttcacgtgaataacagcattcaattggtagaagataatcaaaagaatgtaccataacaaactaagtctgt |
129 |
Q |
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| T |
9696227 |
atataagcacgatgcaacatataacataacttcac-tgaataacagcattcaattggtagaagataatcaacagaatgtaccataacaaactgagtctgt |
9696129 |
T |
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| Q |
130 |
attaataataaaggtgggatttaagtacagatcatgaagctgaatctacacttaaactatgcgctaatataaacctaaaaactgtttgttcatcaaaaaa |
229 |
Q |
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| T |
9696128 |
attaataataaaggtgggatttaagtacagatcatgaagctgaatctacacttaaactatgcgctaatataaacctaacaactgtttgttcatcgcaaaa |
9696029 |
T |
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| Q |
230 |
cagctttggatctaaaaagtttcccaattacattccaacctataataatgaaaattattctattgcagttactcctacgcttcttccttcagcaccacca |
329 |
Q |
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| T |
9696028 |
cagctttggatctaaaaagtttcccaattacattccaacctataataatgaaaattattctattgcagttaatcctacgcttcttccttcagcaccacca |
9695929 |
T |
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| Q |
330 |
actttactcctcatcctcctcctg |
353 |
Q |
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| T |
9695928 |
accttactcctcatcctcctcctg |
9695905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 9695791 - 9695742
Alignment:
| Q |
467 |
cttcagacttggacttctcagatccttcttcctccgaagcattcatctca |
516 |
Q |
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| T |
9695791 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
9695742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 14700 - 14748
Alignment:
| Q |
468 |
ttcagacttggacttctcagatccttcttcctccgaagcattcatctca |
516 |
Q |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctca |
14748 |
T |
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