View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_2 (Length: 624)
Name: NF1158_low_2
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 341 - 528
Target Start/End: Original strand, 36545400 - 36545587
Alignment:
| Q |
341 |
gtagatgttctatttgtgtatgtgtttcatttatgtgacaatgatcgtagaaaagggtcttgtggaaaatgttcctttcccaattttaaggaaacaacgt |
440 |
Q |
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| T |
36545400 |
gtagatgttctatatgtgtatgtgtttcatttatgtgacaatgatcgtagaaaagggtcttgtggaaaatgttcctttcccaattttaaggaaacaacgt |
36545499 |
T |
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| Q |
441 |
agcatgcatactttgtgtgtctattcttattcnnnnnnncttttgtgttcagaagctgaactgaaaatttgtgttttatattcctctt |
528 |
Q |
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| T |
36545500 |
agcatgcatactttgtgtgtctattcttattctttttttcttttgtgttcagaagctgaactgaaaatttgtgttttatattcctctt |
36545587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 82 - 243
Target Start/End: Original strand, 36545140 - 36545301
Alignment:
| Q |
82 |
gtgagatgaaatgaaaccgctgttataatgttttggtacaaatccaacgttacgcacacactgtctcactgaatttcatgctacatggaatagaagaatc |
181 |
Q |
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| T |
36545140 |
gtgaaatgaaatgaaaccgctgttataatgttttggtacaaatccaacgttacgcacacactgtctcactgaatttcatgctacatggaatagaagaatc |
36545239 |
T |
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| Q |
182 |
atttgcattctcctcattatcaacattaatatatggttctctctctctttctccttttatta |
243 |
Q |
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| T |
36545240 |
atttgcattctcctcattatcaaccttaatatatggttctgtctctctttctccttttatta |
36545301 |
T |
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