View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_20 (Length: 490)
Name: NF1158_low_20
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 30 - 479
Target Start/End: Original strand, 35373981 - 35374428
Alignment:
| Q |
30 |
aatatttctatacaaaaacttgctgattattagttttggatattttaaatataattatttatttgnnnnnnntatagaacaccaaatctaacaaaatcaa |
129 |
Q |
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| T |
35373981 |
aatatttctatacaaaaacttgctgattattagttttgtatattttaaatataattatttatttgaaaaaaatatagaacaccaaatctaacaaaatcaa |
35374080 |
T |
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| Q |
130 |
attttctatattaaatgtagtaataaatttatattcatatttatttttgataagtctaccagaatcaaattgtttgtgtnnnnnnnnnnnnnnnnnttgt |
229 |
Q |
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| T |
35374081 |
attttctatattaaatgtagtaataaatttatattcatatttattttttataagtctgccagaatcaaattgtttgtat-aaaataaaataaaaaattgt |
35374179 |
T |
|
| Q |
230 |
tcttcacagaatttctaaagaaagtgtgacatatataattgatcaaatcaaattttgtatttgatcggatctcgttgagtatttattaacagctcaaatc |
329 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35374180 |
tcttcacagaatatctaaagaaagtgtgacatatataattgatcaaatcaaattttgtatttgatcggatctcgttgagtatttattaacagctcaaatc |
35374279 |
T |
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| Q |
330 |
ttttataagattgaatccaaaaatcttacagtccccgttcctat---nnnnnnngggttggttcttttcttttttgacacaaattatagtctcctttctc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35374280 |
ttttataagattgaatccaaaaatcttacagtccccgttcctataaaaaaaaaagggttggttcttttcttttttgacacaaattatagtctcctttctc |
35374379 |
T |
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| Q |
427 |
tctcactcagtaacacaaactacgttgcacacataatgcgatcctttccctat |
479 |
Q |
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| T |
35374380 |
t----ctcagtaacacaaactacgttgcacacataatgcgatcctttccctat |
35374428 |
T |
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