View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_21 (Length: 490)
Name: NF1158_low_21
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 1438460 - 1438049
Alignment:
| Q |
16 |
acacacgacaaagcattgaagtcacccacaattaacgtgcacataaagtaagagaaccacgttctacctccgtccaagagcctgaagaaagttctgtatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438460 |
acacacgacaaagcattgaagtcacccacaattaacgtgcacataaagtaagagaaccacgttctacctccgtccaagagcctgaagaaagttctgtatg |
1438361 |
T |
|
| Q |
116 |
tttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaaaatagcttggtacttgattaccagcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438360 |
tttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaaaatagcttggtacttgattaccagcca |
1438261 |
T |
|
| Q |
216 |
tagtactgatttgctgtattaaagataacatgggaatgattggtaagtaatatcaaaccattcatgtgtattttagcattaattcaacttaggcgccctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1438260 |
tagtactgatttgctgtattaaagataacatgggaatgattggtaagtaatatcaaaccattcatgtgtattttagcattaattcaactta---gccctt |
1438164 |
T |
|
| Q |
316 |
gacatgatattagacaacatttgatcatgttttccaaagttcaatccctgtctttcccttttttctaatattaaatgttaaaatggtataaatgtgattt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438163 |
gacatgatattagacaacatttgatcatgttttccaaagttcaatccctgtctttcccttttttctaatattaaatgttaaaatggtataaatgtgattt |
1438064 |
T |
|
| Q |
416 |
tctaaaactgcatat |
430 |
Q |
| |
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||||||||||||||| |
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| T |
1438063 |
tctaaaactgcatat |
1438049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 28089753 - 28089341
Alignment:
| Q |
16 |
acacacgacaaagcattgaagtcacccacaattaacgtgcacataaagtaagagaaccacgttctacctccgtccaagagcctgaagaaagttctgtatg |
115 |
Q |
| |
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|||||| | |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28089753 |
acacacaataaagcattgatgtcaccaacaattaacgtaaacataaagtaagagaaccacgttctacctccgtccaagagcctgaagaaagttctgtatg |
28089654 |
T |
|
| Q |
116 |
tttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaaaatagcttggtacttgattaccagcca |
215 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
28089653 |
tttccaatgagaagcgcaaaaagcaagagtcccaatcctatgatggacattgtaaaaagaacttcccacacaaaatagcttggttcttgattaccagcta |
28089554 |
T |
|
| Q |
216 |
tagtactgatttgctgtattaaagataacatgggaatgattggtaagtaatatcaaaccattcatgtgtattttagcattaattcaacttaggcgccctt |
315 |
Q |
| |
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||||||||||||||||||||||||| | ||| | || ||||||||||||||||||||||||||| | |||||| || |||||| ||| |||||| |
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| T |
28089553 |
gagtactgatttgctgtattaaagatca-atgtgtataattggtaagtaatatcaaaccattcattttccttttagggttgattcaagtta---gccctt |
28089458 |
T |
|
| Q |
316 |
gacatgatattagacaaca-tttgatcatgttttccaaagttcaatccctgtctttccc--ttttttctaatattaaatgttaaaatggtataaatgtga |
412 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||| ||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
28089457 |
gacatgatattagacaacattttgatcatttttttcaaagttcaatccttgtcttccccctttttttataatattaaatgttaaaatggtataaatgtga |
28089358 |
T |
|
| Q |
413 |
ttttctaaaactgcata |
429 |
Q |
| |
|
||| | |||||||||| |
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|
| T |
28089357 |
tttggtgaaactgcata |
28089341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 28015720 - 28015574
Alignment:
| Q |
136 |
aagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaaaatagcttggtacttgattaccagccatagtactgatttgctgtatt |
235 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| |||||||||| | |||||||||| |||||||||||||| |||| |||||||||||| | |
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| T |
28015720 |
aagcaagagtcccaatgccatgatggacattgtaaagaggacttcccacaaataatagcttggagtttgattaccagccagagtaatgatttgctgtaat |
28015621 |
T |
|
| Q |
236 |
aaagataacatgggaatgattggtaagtaatatcaaaccattcatgt |
282 |
Q |
| |
|
|||| | |||| || || |||||||||||||||||||| |||||||| |
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| T |
28015620 |
aaagctcacataggtataattggtaagtaatatcaaactattcatgt |
28015574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 27910844 - 27910697
Alignment:
| Q |
92 |
agagcctgaagaaagttctgtatgtttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaaaat |
191 |
Q |
| |
|
|||| ||||| |||| |||| |||||||| ||||||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
27910844 |
agagactgaataaagctctgcatgtttccgatgagaagcactagaagcaagagtcccaatgctatgatggacattgtaaagaggacttcccacacaaaat |
27910745 |
T |
|
| Q |
192 |
agcttggtacttgattaccagccatagtactgatttgctgtattaaag |
239 |
Q |
| |
|
||||||| |||||||||||||| ||| ||| |||||||||||||| |
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|
| T |
27910744 |
agcttggagtttgattaccagccagagtcatgacttgctgtattaaag |
27910697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 28532104 - 28531981
Alignment:
| Q |
76 |
gttctacctccgtccaagagcctgaagaaagttctgtatgtttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagaga |
175 |
Q |
| |
|
||||||||| | ||||||| | || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| ||| |
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| T |
28532104 |
gttctaccttcttccaagaccttggagaaagttctgtatgtttccaatgagaagtgcaaaaagcaagagtcccaatcctatgattgcaattgtaaaaaga |
28532005 |
T |
|
| Q |
176 |
acttcccacacaaaatagcttggt |
199 |
Q |
| |
|
|||||||| ||||||||||||||| |
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| T |
28532004 |
acttcccatacaaaatagcttggt |
28531981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 28071550 - 28071367
Alignment:
| Q |
89 |
ccaagagcctgaagaaagttctgtatgtttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaa |
188 |
Q |
| |
|
||||||| ||||| |||| |||||||||||| |||||||| || ||||||||||||||| | |||||| |||||||||| || ||||||||||||| |
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|
| T |
28071550 |
ccaagagactgaaaaaagccctgtatgtttccgatgagaagtgctagaagcaagagtcccaacgccatgatgcacattgtaaaaaggacttcccacacaa |
28071451 |
T |
|
| Q |
189 |
aatagcttggtacttgattaccagccatagtactgatttgctgtattaaagataacatgggaatgattggtaagtaatatcaaac |
273 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | | ||||||||||||| | |||| || | |||||||||||||||||||| |
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|
| T |
28071450 |
aatagcttggagcttgattgccagccatagtaattacttgctgtattaaa-ttcacataggtgtaattggtaagtaatatcaaac |
28071367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 27999706 - 27999579
Alignment:
| Q |
109 |
ctgtatgtttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacacaaaatagcttggtacttgatta |
208 |
Q |
| |
|
|||||||||||| |||||||| || ||| | |||||||||| | |||||||| | ||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
27999706 |
ctgtatgtttccgatgagaagggctagaagtatgagtcccaatgccatgatggaaactgtaaagaggacttcccacacaaaatagcttggagtttgatta |
27999607 |
T |
|
| Q |
209 |
ccagccatagtactgatttgctgtatta |
236 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
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|
| T |
27999606 |
ccagccagagtaatgatttgctgtatta |
27999579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 283
Target Start/End: Complemental strand, 28032913 - 28032677
Alignment:
| Q |
45 |
aattaacgtgcacataaagtaagagaaccacgttctacctccgtccaagagcctgaagaaagttctgtatgtttccaatgagaagcgcataaagcaagag |
144 |
Q |
| |
|
||||||| |||||| |||||||||||| || ||||||||| || |||||| |||| | || |||||||| | ||||||||| ||||| |||||| |
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|
| T |
28032913 |
aattaacatgcacagaaagtaagagaaaca--ttctacctctgtgcaagagactgattagaggtctgtatggtgccaatgagatgcgcaaggtacaagag |
28032816 |
T |
|
| Q |
145 |
tcccaatcctatgatggacattgtaaagagaacttcccacacaaaatagcttggtacttgattaccagccatagtactgatttgctgtattaaagataac |
244 |
Q |
| |
|
||||||| | |||||||||||||||||||| | ||||||| | ||| ||||| |||||||||||||| |||| |||||||||||||||||| | || |
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|
| T |
28032815 |
tcccaataccatgatggacattgtaaagaggatttcccacgaagaattacttggagtttgattaccagccagagtaatgatttgctgtattaaagctcac |
28032716 |
T |
|
| Q |
245 |
atgggaatgattggtaagtaatatcaaaccattcatgtg |
283 |
Q |
| |
|
| | || ||||||||||||| |||||| | ||||||| |
|
|
| T |
28032715 |
agatgtataattggtaagtaatgtcaaactactcatgtg |
28032677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 27896091 - 27895980
Alignment:
| Q |
88 |
tccaagagcctgaagaaagttctgtatgtttccaatgagaagcgcataaagcaagagtcccaatcctatgatggacattgtaaagagaacttcccacaca |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||| ||||| ||| ||||| || |||||||| | | |
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|
| T |
27896091 |
tccaagagcctgaagaaagttttgtatgtttccaatgagaagagcgaaaagcaagagtcctaatccaatgattcccatcgtaaaaaggacttcccaaata |
27895992 |
T |
|
| Q |
188 |
aaatagcttggt |
199 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27895991 |
aaatagcttggt |
27895980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 28031973 - 28031880
Alignment:
| Q |
337 |
tgatcatgttttccaaagttcaatccctgtctttcccttttttctaatattaaatgttaaaatggtataaatgtgattttctaaaactgcatat |
430 |
Q |
| |
|
|||||||| ||||||| |||| || || || |||| ||| ||||||||||||| |||||||||||| || |||||||| |||||| ||||| |
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|
| T |
28031973 |
tgatcatgatttccaatattcatcccatgactctcccatttgtctaatattaaatcttaaaatggtatgaaagtgattttgcaaaactacatat |
28031880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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