View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_23 (Length: 450)
Name: NF1158_low_23
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 53 - 440
Target Start/End: Complemental strand, 51532754 - 51532367
Alignment:
| Q |
53 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
152 |
Q |
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| T |
51532754 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
51532655 |
T |
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| Q |
153 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaatatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
252 |
Q |
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| T |
51532654 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaaaatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
51532555 |
T |
|
| Q |
253 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccacttgtttaatcactaaatacagtattatactgagacata |
352 |
Q |
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| T |
51532554 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattcccacttgtttaatcactaaatacagtattatactgagacata |
51532455 |
T |
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| Q |
353 |
catggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaagatcccccagaataa |
440 |
Q |
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| T |
51532454 |
catggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaagatcccccaaaataa |
51532367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 232 - 433
Target Start/End: Complemental strand, 51526837 - 51526627
Alignment:
| Q |
232 |
tggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccac---ttgtttaatcacta |
328 |
Q |
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| T |
51526837 |
tggggttaacagtaacccgtgtcc-ttttgcttttacatactttttctttgatacaataccaagaaccgttgtgaattacaacaactcttttaatcacta |
51526739 |
T |
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| Q |
329 |
aatacagtattatactgagacatacatggtttta-------agttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaac |
421 |
Q |
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| T |
51526738 |
aatacaatattatatttagacatacatgaattaatttgtcaagttaaatttactttacactttcaaaccagaagtgtaagttacaccggtggaaggtaac |
51526639 |
T |
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| Q |
422 |
caaagatccccc |
433 |
Q |
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| T |
51526638 |
caaagattcccc |
51526627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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