View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_24 (Length: 438)

Name: NF1158_low_24
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_24
NF1158_low_24
[»] chr2 (4 HSPs)
chr2 (83-418)||(13163572-13163907)
chr2 (84-278)||(17864246-17864439)
chr2 (78-187)||(37438889-37438998)
chr2 (157-210)||(36842625-36842678)
[»] chr5 (4 HSPs)
chr5 (88-270)||(19852800-19852982)
chr5 (83-183)||(34738899-34738999)
chr5 (144-210)||(3412627-3412689)
chr5 (153-185)||(9844183-9844215)
[»] chr1 (5 HSPs)
chr1 (144-243)||(45619441-45619540)
chr1 (144-224)||(13432675-13432755)
chr1 (156-210)||(5357073-5357127)
chr1 (144-185)||(28413029-28413070)
chr1 (144-185)||(38671557-38671598)
[»] chr3 (3 HSPs)
chr3 (84-268)||(25692744-25692928)
chr3 (153-185)||(4591629-4591661)
chr3 (153-185)||(27901382-27901414)
[»] chr8 (5 HSPs)
chr8 (92-188)||(27666416-27666513)
chr8 (155-210)||(24219605-24219657)
chr8 (144-185)||(5063341-5063382)
chr8 (153-185)||(7933282-7933314)
chr8 (174-230)||(14399950-14400005)
[»] chr7 (4 HSPs)
chr7 (83-187)||(8880770-8880874)
chr7 (144-185)||(10830483-10830524)
chr7 (144-185)||(11024275-11024316)
chr7 (153-185)||(21900543-21900575)
[»] chr6 (3 HSPs)
chr6 (144-186)||(1052061-1052103)
chr6 (144-185)||(10080938-10080979)
chr6 (153-185)||(18766536-18766568)
[»] chr4 (2 HSPs)
chr4 (144-185)||(667006-667047)
chr4 (153-181)||(13003172-13003200)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 83 - 418
Target Start/End: Original strand, 13163572 - 13163907
Alignment:
Q  83 aaatgagcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacg 182  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13163572 aaatgaacttttatacttctgcataattttgcaatctcgccaagcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacg 13163671  T
Q  183 tcatcatccacttgccccaaaccgccttagctcaccaggcaggacaattctcgccagggcgaactctggtcttcaaaaacatggtccctagaactcttct 282  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13163672 tcatcatccacttcccccaaaccgccttagctcactgggcaggacaattctcgccagggcgaactctggtcttcaaaaacatggtccctataactcttct 13163771  T
Q  283 tcccgccatggtgacatgtgttgctctggcgaactctcatccttgaaaacacgggttatggaacttcatattcgccacgacgacaggtgttgctcgggcg 382  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13163772 tcccgccatggcgacatgtgtcgctctggcgaactctcatccttgaaaacatgggttatggaacttcatatccgccacgacgacaggtgttgctcgggcg 13163871  T
Q  383 acaaacccttttgctcctctttttgtttttctttca 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  13163872 acaaacccttttgctcctctttttgtttttctttca 13163907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 278
Target Start/End: Original strand, 17864246 - 17864439
Alignment:
Q  84 aatgagcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacgt 183  Q
    ||||||||||||||||| |||||||||||||  |||||||||| |||||||| |||||  |||||  | |||||||||| | ||||||||||| ||||||    
T  17864246 aatgagcttttatacttctgcataattttgctttctcgccaggtaggatttgctcgctgtggcgaactgagctttcttttcgagtgggtttctaccacgt 17864345  T
Q  184 catcatccacttgccccaaaccgccttagctcaccaggcaggacaattctcgccagggcgaactctggtcttcaaaaacatggtccctagaactc 278  Q
    |||| | || |   || ||| |||| |||||| ||||| |||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  17864346 catccttcagtgttccaaaatcgccatagctcgccaggaagga-atttctcgccatggcgaactctgatcttcaaaaacatggtctctagaactc 17864439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 37438998 - 37438889
Alignment:
Q  78 gaagtaaatgagcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctg 177  Q
    |||| ||||||| |||||||||| |||||||||||||  ||| | ||||||||||||| || ||||| |||  | ||||||||||||  ||||||||||     
T  37438998 gaaggaaatgagattttatacttctgcataattttgctttctagtcaggcaggatttgctcactcggacgagctgagctttctttgcctgtgggtttcta 37438899  T
Q  178 ccacgtcatc 187  Q
    ||||||||||    
T  37438898 ccacgtcatc 37438889  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 36842625 - 36842678
Alignment:
Q  157 ttctttgctagtgggtttctgccacgtcatcatccacttgccccaaaccgcctt 210  Q
    |||||| | ||||||||||||||| |||||||||||||||||  ||||||||||    
T  36842625 ttctttacgagtgggtttctgccatgtcatcatccacttgccttaaaccgcctt 36842678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 88 - 270
Target Start/End: Complemental strand, 19852982 - 19852800
Alignment:
Q  88 agcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacgtcatc 187  Q
    |||||||||| ||||||| |||||  || ||||||||||||||   | ||||    |||||||| | |||||||||| |||||||||||||||| ||| |    
T  19852982 agcttttatatttatgcaaaatttgacattctcgccaggcagggaattgtcgtcatggcgacatgacctttctttgccagtgggtttctgccacatcacc 19852883  T
Q  188 atccacttgccccaaaccgccttagctcaccaggcaggacaattctcgccagggcgaactctggtcttcaaaaacatggtccc 270  Q
    || ||||||| |||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  19852882 atgcacttgctccaaaccgccttagctcgtcaggcaggacatttttcgccagggcgaactctggtcttcaaaaacatggtccc 19852800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 34738899 - 34738999
Alignment:
Q  83 aaatgagcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacg 182  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||  || ||  | | |||||||||| |||||||||||||||||    
T  34738899 aaatgagcttttatacttctgcataattttgcattctcgccaggcaggatttgctcgctatggtgaactgacctttctttgccagtgggtttctgccacg 34738998  T
Q  183 t 183  Q
    |    
T  34738999 t 34738999  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 3412689 - 3412627
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtcatcatccacttgccccaaaccgcctt 210  Q
    |||||||| | |||||||||| |||||||||||||||| ||||    ||||| ||||||||||||||    
T  3412689 ggcgacatcaactttctttgccagtgggtttctgccacatcat----cacttaccccaaaccgcctt 3412627  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 9844183 - 9844215
Alignment:
Q  153 agctttctttgctagtgggtttctgccacgtca 185  Q
    |||||||||||| ||||||||||||||||||||    
T  9844183 agctttctttgccagtgggtttctgccacgtca 9844215  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 45619540 - 45619441
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtcatcatccacttgccccaaaccgccttagctcaccaggcaggacaattctcgccagggcg 243  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| || |||||| ||||    
T  45619540 ggcgacatcagctttctttgccagtgggtttctgccacgtcatcatccacttgcctcaaaccgccttacctcgccaggcaggacatttgtcgccatggcg 45619441  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 13432675 - 13432755
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtcatcatccacttgccccaaaccgccttagctcaccaggcag 224  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||||||||| || ||| ||||| ||| ||||||||    
T  13432675 ggcgacatcagctttctttgccagtgagtttctgccacgtcatcatccacttgcctcacaccaccttacctcgccaggcag 13432755  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 5357127 - 5357073
Alignment:
Q  156 tttctttgctagtgggtttctgccacgtcatcatccacttgccccaaaccgcctt 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  5357127 tttctttgccagtgggtttctgccacgtcatcatccacttgcctcaaaccgcctt 5357073  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 28413070 - 28413029
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  28413070 ggcgacttgagctttctttgctagtgggtttctgccacgtca 28413029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 38671598 - 38671557
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  38671598 ggcgacttgagctttctttgccagtgggtttctgccacgtca 38671557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 25692744 - 25692928
Alignment:
Q  84 aatgagcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacgt 183  Q
    ||||||||||||||||| |||| |||||| || |||| ||||| || ||||| || |   |||||  | |  ||||||||||||||||||| ||||||||    
T  25692744 aatgagcttttatacttctgcagaattttacattctcaccaggaagaatttgttcaccatggcgagctgacttttctttgctagtgggtttttgccacgt 25692843  T
Q  184 catcatccacttgccccaaaccgccttagctcaccaggcaggacaattctcgccagggcgaactctggtcttcaaaaacatggtc 268  Q
    |||| |||| |||  ||||||||||||||||| | ||||| ||   || || ||| |||||||||||  ||||||||||||||||    
T  25692844 catcctccagttgttccaaaccgccttagctcgctaggcatgatttttttcaccatggcgaactctgaacttcaaaaacatggtc 25692928  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 4591629 - 4591661
Alignment:
Q  153 agctttctttgctagtgggtttctgccacgtca 185  Q
    |||||||||||| ||||||||||||||||||||    
T  4591629 agctttctttgccagtgggtttctgccacgtca 4591661  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 27901382 - 27901414
Alignment:
Q  153 agctttctttgctagtgggtttctgccacgtca 185  Q
    |||||||||| ||||||||||||||||||||||    
T  27901382 agctttctttcctagtgggtttctgccacgtca 27901414  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 27666513 - 27666416
Alignment:
Q  92 tttatacttatgcataattttgcaatctcgccaggcaggatttg-gtcgctcgggcgacattagctttctttgctagtgggtttctgccacgtcatca 188  Q
    ||||||||| | ||||||||| |  ||| ||||||||||||||  ||||||  ||||||||||||||||||| | |||||||||||||||||||||||    
T  27666513 tttatacttttacataatttttctttctggccaggcaggatttttgtcgctatggcgacattagctttcttttccagtgggtttctgccacgtcatca 27666416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 24219657 - 24219605
Alignment:
Q  155 ctttctttgctagtgggtttctgccacgtcatcatccacttgccccaaaccgcctt 210  Q
    ||||||||| |||||||||||||||||||   |||||||||||| |||||||||||    
T  24219657 ctttctttgttagtgggtttctgccacgt---catccacttgcctcaaaccgcctt 24219605  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 5063382 - 5063341
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  5063382 ggcgacttgagctttctttgccagtgggtttctgccacgtca 5063341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 7933314 - 7933282
Alignment:
Q  153 agctttctttgctagtgggtttctgccacgtca 185  Q
    |||||||||||| ||||||||||||||||||||    
T  7933314 agctttctttgccagtgggtttctgccacgtca 7933282  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 14399950 - 14400005
Alignment:
Q  174 tctgccacgtcatcatccacttgccccaaaccgccttagctcaccaggcaggacaat 230  Q
    ||||||||||||||||||||||| ||  |||||||||| ||| |||||||| |||||    
T  14399950 tctgccacgtcatcatccacttg-ccttaaccgccttacctcgccaggcagaacaat 14400005  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 8880874 - 8880770
Alignment:
Q  83 aaatgagcttttatacttatgcataattttgcaatctcgccaggcaggatttggtcgctcgggcgacattagctttctttgctagtgggtttctgccacg 182  Q
    ||||| |||||||||||| ||||||||||  || |||||||||||||||| || |||||  |||||  | | |||||||| | | |||||||||||||||    
T  8880874 aaatgggcttttatacttttgcataatttcacattctcgccaggcaggatatgctcgctatggcgagctcacctttcttttccattgggtttctgccacg 8880775  T
Q  183 tcatc 187  Q
    |||||    
T  8880774 tcatc 8880770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 10830524 - 10830483
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  10830524 ggcgacttgagctttctttgccagtgggtttctgccacgtca 10830483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 11024316 - 11024275
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  11024316 ggcgacttgagctttctttgccagtgggtttctgccacgtca 11024275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 21900575 - 21900543
Alignment:
Q  153 agctttctttgctagtgggtttctgccacgtca 185  Q
    |||||||||||| ||||||||||||||||||||    
T  21900575 agctttctttgccagtgggtttctgccacgtca 21900543  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 1052061 - 1052103
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtcat 186  Q
    |||||| | |||||||||||| |||||||||||||||||||||    
T  1052061 ggcgacttaagctttctttgccagtgggtttctgccacgtcat 1052103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 10080979 - 10080938
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  10080979 ggcgacttgagctttctttgccagtgggtttctgccacgtca 10080938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 18766536 - 18766568
Alignment:
Q  153 agctttctttgctagtgggtttctgccacgtca 185  Q
    |||||||||| ||||||||||||||||||||||    
T  18766536 agctttcttttctagtgggtttctgccacgtca 18766568  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 667047 - 667006
Alignment:
Q  144 ggcgacattagctttctttgctagtgggtttctgccacgtca 185  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  667047 ggcgacttgagctttctttgcgagtgggtttctgccacgtca 667006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 13003200 - 13003172
Alignment:
Q  153 agctttctttgctagtgggtttctgccac 181  Q
    |||||||||||||||||||||||||||||    
T  13003200 agctttctttgctagtgggtttctgccac 13003172  T

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