View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_25 (Length: 436)

Name: NF1158_low_25
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_25
NF1158_low_25
[»] chr2 (7 HSPs)
chr2 (30-279)||(28693224-28693474)
chr2 (281-427)||(31365460-31365607)
chr2 (279-427)||(2154014-2154168)
chr2 (279-415)||(5270467-5270604)
chr2 (279-326)||(9624059-9624106)
chr2 (279-425)||(43177059-43177211)
chr2 (278-316)||(22550956-22550994)
[»] chr1 (12 HSPs)
chr1 (279-427)||(24186618-24186767)
chr1 (276-427)||(17305075-17305231)
chr1 (278-427)||(34393585-34393740)
chr1 (279-427)||(27842571-27842725)
chr1 (277-427)||(34588890-34589040)
chr1 (279-427)||(790060-790204)
chr1 (278-427)||(51236325-51236479)
chr1 (279-427)||(34387568-34387712)
chr1 (286-425)||(32132032-32132171)
chr1 (279-425)||(15649133-15649275)
chr1 (279-427)||(22871202-22871356)
chr1 (282-326)||(48313899-48313943)
[»] chr4 (19 HSPs)
chr4 (280-427)||(40143309-40143461)
chr4 (279-423)||(46171600-46171745)
chr4 (282-427)||(31879541-31879687)
chr4 (280-427)||(6582300-6582448)
chr4 (277-425)||(35653323-35653472)
chr4 (279-427)||(12389128-12389282)
chr4 (275-425)||(23516061-23516217)
chr4 (310-425)||(27510769-27510885)
chr4 (278-425)||(49706417-49706570)
chr4 (349-415)||(35258245-35258311)
chr4 (322-415)||(38370121-38370214)
chr4 (280-326)||(47996517-47996563)
chr4 (305-427)||(16048087-16048207)
chr4 (313-425)||(38935769-38935877)
chr4 (346-425)||(48995734-48995813)
chr4 (349-415)||(2736710-2736776)
chr4 (278-340)||(26460677-26460738)
chr4 (279-415)||(39267410-39267547)
chr4 (275-323)||(35258202-35258250)
[»] chr3 (15 HSPs)
chr3 (279-427)||(13857039-13857182)
chr3 (274-427)||(5938083-5938237)
chr3 (272-427)||(50308957-50309117)
chr3 (279-420)||(10223036-10223173)
chr3 (282-415)||(40929296-40929430)
chr3 (279-399)||(44773996-44774117)
chr3 (359-427)||(5931151-5931219)
chr3 (278-425)||(33639427-33639580)
chr3 (276-415)||(50328369-50328504)
chr3 (279-411)||(25639429-25639567)
chr3 (279-415)||(50875502-50875639)
chr3 (315-415)||(55325186-55325287)
chr3 (315-411)||(32863593-32863690)
chr3 (333-425)||(50303230-50303323)
chr3 (282-322)||(4155916-4155956)
[»] chr8 (23 HSPs)
chr8 (271-427)||(33691671-33691828)
chr8 (278-427)||(19147509-19147659)
chr8 (279-427)||(10902954-10903103)
chr8 (277-404)||(17564446-17564574)
chr8 (279-427)||(14333904-14334053)
chr8 (278-417)||(19127282-19127427)
chr8 (279-425)||(34360358-34360505)
chr8 (342-427)||(40346976-40347061)
chr8 (278-425)||(4885503-4885656)
chr8 (315-415)||(15254944-15255045)
chr8 (279-425)||(42475638-42475775)
chr8 (319-425)||(26053621-26053728)
chr8 (310-415)||(9539957-9540058)
chr8 (349-425)||(10226780-10226856)
chr8 (279-326)||(16587532-16587579)
chr8 (331-421)||(21184105-21184196)
chr8 (282-316)||(36368499-36368533)
chr8 (375-427)||(36368557-36368609)
chr8 (335-425)||(40614641-40614732)
chr8 (277-322)||(27114871-27114916)
chr8 (376-425)||(27114944-27114993)
chr8 (279-347)||(2252057-2252125)
chr8 (314-425)||(28733986-28734097)
[»] chr7 (14 HSPs)
chr7 (279-427)||(45067554-45067703)
chr7 (279-427)||(45920077-45920221)
chr7 (279-427)||(35086360-35086504)
chr7 (279-425)||(28681816-28681963)
chr7 (278-425)||(32745838-32745990)
chr7 (279-425)||(46400008-46400155)
chr7 (280-425)||(11353645-11353786)
chr7 (278-425)||(33382379-33382522)
chr7 (279-421)||(40474333-40474481)
chr7 (314-415)||(8550636-8550738)
chr7 (279-340)||(27856473-27856534)
chr7 (278-425)||(31845081-31845234)
chr7 (346-425)||(32030342-32030421)
chr7 (287-326)||(10166613-10166652)
[»] chr6 (9 HSPs)
chr6 (278-424)||(33702530-33702672)
chr6 (280-427)||(17154307-17154460)
chr6 (279-427)||(29092786-29092930)
chr6 (276-409)||(23111270-23111404)
chr6 (276-399)||(12356383-12356507)
chr6 (279-425)||(8636168-8636310)
chr6 (313-415)||(1800932-1801035)
chr6 (349-425)||(27596511-27596587)
chr6 (284-326)||(27596477-27596519)
[»] chr5 (8 HSPs)
chr5 (290-427)||(3523127-3523270)
chr5 (278-427)||(31069105-31069250)
chr5 (279-420)||(26818394-26818531)
chr5 (279-425)||(32955763-32955915)
chr5 (277-363)||(28747515-28747601)
chr5 (314-425)||(33062046-33062158)
chr5 (377-415)||(42545740-42545778)
chr5 (388-425)||(8465186-8465223)
[»] scaffold0488 (1 HSPs)
scaffold0488 (274-427)||(7395-7554)
[»] scaffold0064 (1 HSPs)
scaffold0064 (279-425)||(54084-54236)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 28693474 - 28693224
Alignment:
Q  30 agaacttctctcttgctgctgctccaataaagggttagatgcaggaacttgttgaggctgtgttggatttcgccgagctactattctctttgtgaagtat 129  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28693474 agaacttctctcttgatgctgctccaataaagggttagatgcaggaacttgttgaggccgtgttggatttcgccgagctactattctctttgtgaagtat 28693375  T
Q  130 ggtggtagtggttatggtgtatgagaaacacaactccattgaaaaagaaaatatttca-ttttgaagttcttatgcaaaatgattggaagatcgtaccta 228  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | || | |     
T  28693374 ggtggtagtggttctggtgtatgagaaacacaactccattgaaaaagaaaatatttcatttttgaaattcttatgcaaaatgattggaaggttgttcatg 28693275  T
Q  229 caatgcgattatttaaagtggcattgagtatgtttgaactttgttgtaact 279  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28693274 caatgcgattatttaaagtggcgttgagtatgtttgaactttgttgtaact 28693224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 281 - 427
Target Start/End: Original strand, 31365460 - 31365607
Alignment:
Q  281 ggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgactaac 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||   |||||    
T  31365460 ggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttgaaatggtttgggaaaatcgaaccgaaccgtttcaagtatggagctaac 31365559  T
Q  380 cgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||    
T  31365560 cgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 31365607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 2154168 - 2154014
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccga-----aatttt-aaaatggttcggaaaatcgaaccgaaccgtttcaggtatgc 372  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||     |||||| |||| | || |||||| ||||||||||||| | |||||||     
T  2154168 taggggtgggcatgattcggttaacccaaaaaaccgaaccgaaccgagctgaaattttgaaaaagtttgggaaaaccgaaccgaaccgtgttaggtatgg 2154069  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
      ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  2154068 agctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 2154014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 5270604 - 5270467
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||||||| |||||||||||||||  |  | |||| |||| ||||| | || ||||||||||||| | | ||||||||| |||| |||||||  ||||    
T  5270604 taggggtgggtatggttcggttaaccatattacccgacccgacccgaagtgttgaaatggttcggaataactgaaccgaactgtttaaggtatggaacta 5270505  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    || ||||| ||||||||||||| ||| |||||||||||    
T  5270504 actgaactaaaccaaagttatggttcaattaaccgttt 5270467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 9624106 - 9624059
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa 326  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  9624106 taggggtgggcatggttcggttaacccaaaaaaccgaatcgaaccgaa 9624059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 43177059 - 43177211
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaac----cgaaatt-ttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgc 372  Q
    ||||||||||||||||||||||||||   |||||||||||||||    | |||||  ||||||||||| ||||||  |||||||||||||| | || ||     
T  43177059 taggggtgggcatggttcggttaaccatcaaaaccgaaccgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttgg 43177158  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
     | ||| | ||||||||| |||||||| |||| |||||| ||| |||||||||    
T  43177159 aagtaatcaaactgaacctaagttatggttcggttaaccatttgcttacctat 43177211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 22550956 - 22550994
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaa 316  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  22550956 ctaggggtgggcatggttcggttaacttaaaaaaccgaa 22550994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 24186618 - 24186767
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||   |||    
T  24186618 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagcta 24186717  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  24186718 accgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 24186767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 276 - 427
Target Start/End: Complemental strand, 17305231 - 17305075
Alignment:
Q  276 aactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa-----attttaaaatggttcggaaaatcgaaccgaaccgtttcaggtat 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||| ||||||||||||||||| ||||    
T  17305231 aactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaccgaaattttaaaatggttcggaaaaccgaaccgaaccgtttcatgtat 17305132  T
Q  371 gcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    || ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  17305131 gcaactaaccgaaccgaaccaaagttatggttcggttaaccgttttcttacctatga 17305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 34393585 - 34393740
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaa-----ccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatg 371  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  34393585 ctaggggtgggcatggttcggttaacctaaaaaatcgaaccgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatg 34393684  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
       ||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  34393685 gagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatga 34393740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 27842725 - 27842571
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaa-----ccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgc 372  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||     
T  27842725 taggggtgggcatggttcggttaacctaaaaaatcgaaccgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatgg 27842626  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
      ||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  27842625 agctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatga 27842571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 277 - 427
Target Start/End: Complemental strand, 34589040 - 34588890
Alignment:
Q  277 actaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa-----attttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatg 371  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||     |||||||||||||||||||||     |||||||||||||||||||    
T  34589040 actaggggtgggcatggttcggttaacctaaaaaactgaactgaaccgaaccggaattttaaaatggttcggaaaa-----ccgaaccgtttcaggtatg 34588946  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    | |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34588945 caactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 34588890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 790060 - 790204
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcg-gaaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||| |||||||||||||||||||||||||||||||||||||     ||||| |||||||||| |||||||||||||||||||||||||||||    ||    
T  790060 tagggatgggcatggttcggttaacctaaaaaaccgaaccgaa-----attttgaaatggttcgagaaaatcgaaccgaaccgtttcaggtatggagtta 790154  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  790155 accgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 790204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 51236479 - 51236325
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa-----attttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgc 372  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||     ||||| ||||||||| ||||| |||||||||||||||||||||||     
T  51236479 ctaggggtgggcatggtttggttaacctaaaaaaccgaaccgaaccaaaccaaaattttgaaatggttcagaaaaccgaaccgaaccgtttcaggtatgg 51236380  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
      |||||| |||||||||||||||||| |||| ||||| ||||||||||||||||    
T  51236379 acctaaccaaactgaaccaaagttatggttcggttaactgttttcttacctatga 51236325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 34387712 - 34387568
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatgg-ttcggaaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||||||||||||||||||||||||||||     || |||||||||||||| |||||| || |||||| |||||||||||||||||||||||   |||    
T  34387712 taggggtgggcatggttcggttaacctaaaa-----aatcgaaccgaaattttgaaatggtttgggaaaaccgaaccgaaccgtttcaggtatggagcta 34387618  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34387617 accgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 34387568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 425
Target Start/End: Complemental strand, 32132171 - 32132032
Alignment:
Q  286 gggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgactaaccgaac 384  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||| || ||  ||||||||||     
T  32132171 gggcatggtttggttaacc-aaaaaaccgaaccgaaccaaaattttgaagtggttcgggaaaatcgaaccgaaccgtttcaagtttggaactaaccgaat 32132073  T
Q  385 tgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||| ||||||||||| || | |||||| ||| |||||||||    
T  32132072 tgagccaaagttatggtttggttaaccatttgcttacctat 32132032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 425
Target Start/End: Complemental strand, 15649275 - 15649133
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||||||||||||||  ||||| | ||||||||||||     ||||||||| ||||||||| |||||||||||||||||| ||| | || ||   |||    
T  15649275 taggggtgggcatggtttagttaatccaaaaaaccgaac-----cgaaattttgaaatggttcgggaaaatcgaaccgaaccattttaagtttggagcta 15649181  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||||| |||||||||||||||| || | |||||| ||| |||||||||    
T  15649180 accgagctgaaccaaagttatggtttggttaaccatttgcttacctat 15649133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 22871202 - 22871356
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaa-----ccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgc 372  Q
    ||||||||| |||| |||||||||||||||||  |||  ||||     |||||||||| | |||||| || |||| |||| |||||||||| ||||||      
T  22871202 taggggtggacatgattcggttaacctaaaaattcgattcgaattgaaccgaaattttgatatggtttgggaaaaccgaatcgaaccgttttaggtatag 22871301  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
       ||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  22871302 agttaactaaactgaaccaaagttatggttcggttaaccgttttcttacctatga 22871356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 48313899 - 48313943
Alignment:
Q  282 gggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa 326  Q
    |||||||||||||||||||||||  |  |||||||||||||||||    
T  48313899 gggtgggcatggttcggttaaccatattaaccgaaccgaaccgaa 48313943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 280 - 427
Target Start/End: Complemental strand, 40143461 - 40143309
Alignment:
Q  280 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa-----attttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcga 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| |||||||||||||||||||||||||||||| |    
T  40143461 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaactgaaattttaaaatggttccgaaaatcgaaccgaaccgtttcaggtatgcaa 40143362  T
Q  375 ctaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  40143361 ctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatga 40143309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 279 - 423
Target Start/End: Original strand, 46171600 - 46171745
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatgg-ttcggaaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||| ||||||||||||||| |||||||   |||    
T  46171600 taggggtgggcatggttcggttaacctaaaaaatcgaaccgaaccgaaattttgaaatggtttgggaaaaccgaaccgaaccgttttaggtatggagcta 46171699  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacct 423  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||    
T  46171700 accgaactgaaccaaagttatgtttcggttaaccgttttcttacct 46171745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 282 - 427
Target Start/End: Complemental strand, 31879687 - 31879541
Alignment:
Q  282 gggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgactaacc 380  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| || |||||| ||||||||||||||| ||||    ||||||    
T  31879687 gggtgggcatggttcggttaacctaaacaaccgaaccgaactgaaattttgaaatggtttgggaaaatcaaaccgaaccgtttcaagtatagagctaacc 31879588  T
Q  381 gaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  31879587 gaactgaaccaaagttatggttcgattaaccgttttcttacctatga 31879541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 280 - 427
Target Start/End: Original strand, 6582300 - 6582448
Alignment:
Q  280 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgcgactaa 378  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||| ||||||| ||||||| ||||||    ||||    
T  6582300 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccaaaattttgaaatgattcgggaaaaccgaaccgcaccgtttaaggtatagagctaa 6582399  T
Q  379 ccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||||||||  |||| |||||||||||| |||||||||    
T  6582400 ccgaactgaaccaaagttatagttcggttaaccgttttcctacctatga 6582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 277 - 425
Target Start/End: Complemental strand, 35653472 - 35653323
Alignment:
Q  277 actaggggtgggcatggttcggttaacctaaaaaac-cgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgac 375  Q
    ||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||||||| |||||| |||| |||||||||||| || ||   |    
T  35653472 actaggggtgggcatggttcggttaacttaaaaaaatcaaaccgaaccgaaattttaaaatggtttggaaaaccgaatcgaaccgtttcaagtttggagc 35653373  T
Q  376 taaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    || ||||||||||||||||||||| || | |||||| ||| |||||||||    
T  35653372 tatccgaactgaaccaaagttatggtttggttaaccatttgcttacctat 35653323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 12389128 - 12389282
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa-----attttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgc 372  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||     ||||| |||| |||| |||||| |||||||||| |||| ||| |||     
T  12389128 taggggtgggcatggttcgattaacctaaaaaaccgaaccgaatcgaattgaaattttgaaatagttcaggaaaaccgaaccgaactgtttaaggcatgg 12389227  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
      ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  12389228 agctaaccgaactgaaccaaagttatggttcggttaactgttttcttacctatga 12389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 275 - 425
Target Start/End: Original strand, 23516061 - 23516217
Alignment:
Q  275 taactaggggtgggcatggttcggttaacctaaaaaacc-----gaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggt 368  Q
    ||||||||| |||||||||||||||||| | |||||| |     |||||||||||||||||| ||||||||||| |||||||||||||||| ||| | ||    
T  23516061 taactagggatgggcatggttcggttaatccaaaaaatcaaatcgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccattttaagt 23516160  T
Q  369 atgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
     ||   ||||||||||||||||||||||||| || | |||| | |||||||||||||    
T  23516161 ttggagctaaccgaactgaaccaaagttatggtttggttaatcattttcttacctat 23516217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 27510769 - 27510885
Alignment:
Q  310 aaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgatta 408  Q
    |||| ||| |||||||| | || ||||||||||||| || ||||||||||| ||| |||| ||  |||||||||||||||||||||||||| |||| |||    
T  27510769 aaccaaactgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagttatggttcggtta 27510868  T
Q  409 accgttttcttacctat 425  Q
    ||||||| ||| |||||    
T  27510869 accgtttgcttgcctat 27510885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 49706570 - 49706417
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaac----cgaaatt-ttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatg 371  Q
    |||||||||||||||||||||||||||   |||||||||||||||    | |||||  ||||||||||| ||||||  |||||||||||||| | || ||    
T  49706570 ctaggggtgggcatggttcggttaaccatcaaaaccgaaccgaactgaaccaaattgataaaatggttcgggaaaactgaaccgaaccgtttaaagtttg 49706471  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
      | ||||| |||| |||| |||||||| |||| |||||| ||| |||||||||    
T  49706470 gaagtaaccaaactaaacctaagttatggttcggttaaccatttgcttacctat 49706417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 35258245 - 35258311
Alignment:
Q  349 cgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    |||||| |||||||| |||| ||  ||||||||||||||||||||||||| ||||| ||||||||||    
T  35258245 cgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaagttataattcggttaaccgttt 35258311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 38370121 - 38370214
Alignment:
Q  322 ccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    ||||||| || |||||||||| || ||| |||||||||||||| |||| ||  | |||||||||||||||||||||||| ||| |||||||||||    
T  38370121 ccgaaatgttgaaatggttcgaaataattgaaccgaaccgtttaaggtttgaaattaaccgaactgaaccaaagttatggttc-attaaccgttt 38370214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 47996517 - 47996563
Alignment:
Q  280 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa 326  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||    
T  47996517 aggggtggtcatggttcggttaacctaaaaaaccgaatcgaaccgaa 47996563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 427
Target Start/End: Complemental strand, 16048207 - 16048087
Alignment:
Q  305 taaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgac--taaccgaactgaaccaaagttatgatt 402  Q
    |||||||| |||| ||||||||||||| ||||||||||| ||    |||||||||||||||| ||||   |  |||||||| ||||||||||||||| ||    
T  16048207 taaaaaactgaactgaaccgaaattttgaaatggttcgggaa----aaccgaaccgtttcagttatggagctataaccgaattgaaccaaagttatggtt 16048112  T
Q  403 cgattaaccgttttcttacctatga 427  Q
     | ||| |||||| ||| |||||||    
T  16048111 tggttatccgtttccttgcctatga 16048087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 38935769 - 38935877
Alignment:
Q  313 cgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccg 412  Q
    ||||| ||||||||||||| ||||||||||||||    ||| ||||||||||| || ||   ||||| ||||| ||||||||||||| || | ||||||     
T  38935769 cgaactgaaccgaaattttgaaatggttcggaaa----aactgaaccgtttcaagtttggagctaactgaactaaaccaaagttatggtttggttaacca 38935864  T
Q  413 ttttcttacctat 425  Q
    ||| |||||||||    
T  38935865 tttgcttacctat 38935877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 48995734 - 48995813
Alignment:
Q  346 aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||||||||||||||| |||| ||  | ||||| |||||||||||| ||||| |||| |||||| ||||||| |||||    
T  48995734 aatcgaaccgaaccgtttaaggtttggaattaaccaaactgaaccaaaattatggttcggttaaccattttcttgcctat 48995813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 2736710 - 2736776
Alignment:
Q  349 cgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    ||||||||||||||| || | ||  |||||||||||||||||||||||||| |||| ||||| ||||    
T  2736710 cgaaccgaaccgtttaagatttggaactaaccgaactgaaccaaagttatggttcggttaactgttt 2736776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 26460677 - 26460738
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggtt 340  Q
    ||||||||||||||| ||||||||||  ||||||| ||| |||| ||||||||| ||||||||    
T  26460677 ctaggggtgggcatg-ttcggttaactcaaaaaactgaatcgaatcgaaattttgaaatggtt 26460738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 39267547 - 39267410
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||  ||||||||||||||  |  ||| ||||||||||||| | || ||||| ||||||| || ||||| ||||||||| || | ||  || |    
T  39267547 taggggtgggtgtggttcggttaaccatattaactgaaccgaaccgaagtattgaaatgattcggaataaccgaactgaaccgtttaagatttgaaacga 39267448  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    |  |||||||| |||||||||  |||| ||||||||||    
T  39267447 attgaactgaatcaaagttatcgttcggttaaccgttt 39267410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 35258202 - 35258250
Alignment:
Q  275 taactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaacc 323  Q
    |||||||||||| |||||||||||||||||  |  ||||||||||||||    
T  35258202 taactaggggtgagcatggttcggttaaccatattaaccgaaccgaacc 35258250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 13857039 - 13857182
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaa 378  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  13857039 taggggtgggcatggttcggttaacctaaaaaacc-----gaaccgaaattttaaaatggttcggaaaaccgaaccgaaccgtttcaggtatgcaactaa 13857133  T
Q  379 ccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  13857134 ccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 13857182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 5938237 - 5938083
Alignment:
Q  274 gtaactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgc 372  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  5938237 gtaattaggggtggacatggttcggttaacctaaaaaaccgaaccgaaccgaaattttgaaatggttcggaaaaactgaaccgaaccgtttcaggtatgc 5938138  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
       ||  |||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5938137 tggtatacgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 5938083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 272 - 427
Target Start/End: Original strand, 50308957 - 50309117
Alignment:
Q  272 ttgtaactaggggtgggcatggttcggttaacctaaaaaacc-----gaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcag 366  Q
    |||||| |||||||||||||||||||||||||||||||||||     |||||||||||||||||| |||||||||| |||| ||||||||||||||| ||    
T  50308957 ttgtaagtaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaccgaaattttgaaatggttcgaaaaaccgaaccgaaccgttttag 50309056  T
Q  367 gtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||   |||| |||||||||||||||||||| |||| |||||||||||||||| |||||    
T  50309057 gtatggagctaatcgaactgaaccaaagttatgtttcggttaaccgttttcttacttatga 50309117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 10223173 - 10223036
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaa 378  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||    || ||||||||||||||||||   ||||    
T  10223173 taggggtgggcatggttcggttaatctaaaaaaccgaaccgaaccaaaattttgaaatggttcgggaa----aatcgaaccgtttcaggtatggagctaa 10223078  T
Q  379 ccgaactgaaccaaagttatgattcgattaaccgttttctta 420  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  10223077 ccgaactgaaccaaagttatggttcggttaaccgttttctta 10223036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 415
Target Start/End: Original strand, 40929296 - 40929430
Alignment:
Q  282 gggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaacc 380  Q
    ||||||||||||||| |||||||  |  |||||||||||| |||| | || |||| ||| |||| |||||||| ||||||||| |||| ||  |||||||    
T  40929296 gggtgggcatggttcagttaaccatattaaccgaaccgaatcgaagtgttgaaatcgtttggaataatcgaactgaaccgtttaaggtttggaactaacc 40929395  T
Q  381 gaactgaaccaaagttatgattcgattaaccgttt 415  Q
    ||||||||||||||||||| |||| ||||| ||||    
T  40929396 gaactgaaccaaagttatggttcggttaactgttt 40929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 399
Target Start/End: Complemental strand, 44774117 - 44773996
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcg-gaaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||| |||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||  |||| ||||||||||  ||| | || ||    ||    
T  44774117 taggggtggtcatggttccgttaacccaaaaaaccaaaccgaaccgaaattttgaaatggttcgcaaaaaccgaaccgaacaattttaagtttggagtta 44774018  T
Q  378 accgaactgaaccaaagttatg 399  Q
    ||||||||||||||||||||||    
T  44774017 accgaactgaaccaaagttatg 44773996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 5931151 - 5931219
Alignment:
Q  359 cgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||  ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  5931151 cgtttcaggtatgcagctatccgaactgaaccaaagttataattcggttaaccgttttcttacctatga 5931219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 33639580 - 33639427
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaa-----ttttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatg 371  Q
    ||||||||||| |||||||||||||||  |  ||||||||| |||||||      | || ||||||||||||| |||||| ||||||||||| |||| |     
T  33639580 ctaggggtgggtatggttcggttaaccatattaaccgaaccaaaccgaaccaaagtgttgaaatggttcggaataatcgagccgaaccgtttaaggtttt 33639481  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
      | |||||||| ||||||||||||||| ||||||||||||||| ||| |||||    
T  33639480 gaattaaccgaaatgaaccaaagttatggttcgattaaccgtttgcttccctat 33639427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 50328504 - 50328369
Alignment:
Q  276 aactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcga 374  Q
    |||||||||||||||||||||||||||||  |  ||||||||||||     || || ||||||||||||| || ||||||||||||||| || | |   |    
T  50328504 aactaggggtgggcatggttcggttaaccatattaaccgaaccgaa-----atgttgaaatggttcggaataaccgaaccgaaccgtttaagatttagaa 50328410  T
Q  375 ctaaccgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    | ||| ||||||||||||||||||| |||| ||||||||||    
T  50328409 cgaactgaactgaaccaaagttatggttcggttaaccgttt 50328369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 411
Target Start/End: Complemental strand, 25639567 - 25639429
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccg-----aaccgtttcaggtatgc 372  Q
    ||||||||| ||||||||||||||||  |  ||||||||||||||||| | || |||||||||| || ||| ||||||     |||||||| |||| ||     
T  25639567 taggggtggacatggttcggttaaccatattaaccgaaccgaaccgaattgttgaaatggttcgaaataattgaaccgaactaaaccgtttaaggtttga 25639468  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaacc 411  Q
     | |||||||||||||||||||||||| |||| ||||||    
T  25639467 aattaaccgaactgaaccaaagttatggttcggttaacc 25639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 50875639 - 50875502
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||||||||||||  |  ||||||||||||||||| | || ||||||||||||| || |||||| || | ||| || | |   || |    
T  50875639 taggggtgggcatggttcggttaaccatattaaccgaaccgaaccgaagtgttgaaatggttcggaataaccgaaccaaatcatttaagatttagaacga 50875540  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    || ||||||||||||||||||  |||| ||||||||||    
T  50875539 actgaactgaaccaaagttatagttcggttaaccgttt 50875502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 55325186 - 55325287
Alignment:
Q  315 aaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgt 413  Q
    |||||||||||| | || ||||||||||||| || ||||| ||||||||| |||| ||  ||||||| |||||||||||||||||| ||||  |||||||    
T  55325186 aaccgaaccgaagtgttgaaatggttcggaataaccgaactgaaccgtttaaggtttgaaactaacctaactgaaccaaagttatggttcgtctaaccgt 55325285  T
Q  414 tt 415  Q
    ||    
T  55325286 tt 55325287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 32863690 - 32863593
Alignment:
Q  315 aaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaacc 411  Q
    |||| ||||||| | || ||||||||||||| || | ||||||||||||  |||| ||  |||||||||||||||||||||||||| |||| ||||||    
T  32863690 aaccaaaccgaagtgttgaaatggttcggaataaccaaaccgaaccgttcaaggtttggaactaaccgaactgaaccaaagttatggttcggttaacc 32863593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 425
Target Start/End: Complemental strand, 50303323 - 50303230
Alignment:
Q  333 aaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||||| |||| || ||||||||||||||| |||| ||   ||| ||||||||||||||||||||| |||| |||||||||| ||| |||||    
T  50303323 aaatggtttggaataaccgaaccgaaccgtttaaggtttgaagctatccgaactgaaccaaagttatgtttcggttaaccgtttgcttgcctat 50303230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 4155916 - 4155956
Alignment:
Q  282 gggtgggcatggttcggttaacctaaaaaaccgaaccgaac 322  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  4155916 gggtgggcatggttcggttaaccatcaaaaccgaaccgaac 4155956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 271 - 427
Target Start/End: Complemental strand, 33691828 - 33691671
Alignment:
Q  271 gttgtaactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggta 369  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  33691828 gttgcaactaggggtgggcatggttcagttaacctaaaaatccgaaccgaatcgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggta 33691729  T
Q  370 tgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||   ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33691728 tggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 33691671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 19147509 - 19147659
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgcgact 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||  ||||||||||||||||||||||   ||    
T  19147509 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttgaaatgattcgggaaaactgaaccgaaccgtttcaggtatggagct 19147608  T
Q  377 aaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  19147609 aaccgaactgaaccaaagttatggttcggttaaccattttcttacctatga 19147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 10902954 - 10903103
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||   |||    
T  10902954 taggggtgggcatggttcggttaacccaaaaaatcgaaccgaaccgaaattttgaaatggttcgggaaaaccgaaccgaaccgtttcaggtatggagcta 10903053  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  10903054 accgaactgaaccaaagttatggttcggttaaccgttttcttacatatga 10903103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 277 - 404
Target Start/End: Complemental strand, 17564574 - 17564446
Alignment:
Q  277 actaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgcgac 375  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||   |    
T  17564574 actaggggtgggcatgattcggttaacctaaaaaaccgaaccgaaccgaaattttgaaatggttcgggaaaatcgaaccgaaccgtttcaggtatggagc 17564475  T
Q  376 taaccgaactgaaccaaagttatgattcg 404  Q
    |||||||||||||||||||||||| ||||    
T  17564474 taaccgaactgaaccaaagttatggttcg 17564446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 14333904 - 14334053
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaa-----ccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcg 373  Q
    |||||||||||||||||||||||| |||||||||||||     | ||||||||||||| ||||||||||  ||    |||||||||||||||||||||      
T  14333904 taggggtgggcatggttcggttaatctaaaaaaccgaattgaactgaaccgaaattttgaaatggttcgagaa----aaccgaaccgtttcaggtatgga 14333999  T
Q  374 actaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
     ||||| ||||||||||||||||||| |||| |||  |||||||||||||||||    
T  14334000 gctaactgaactgaaccaaagttatggttcggttactcgttttcttacctatga 14334053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 19127282 - 19127427
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccg-----aaccgaaattttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatg 371  Q
    ||||||||||||||| |||||||||||||| |||||||||||     |||||||||||| ||||| ||| |||||| ||||||||||||||| |||||||    
T  19127282 ctaggggtgggcatgattcggttaacctaagaaaccgaaccgaaccaaaccgaaattttgaaatgattcgggaaaaccgaaccgaaccgttttaggtatg 19127381  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttc 417  Q
       |||||||||||||||||||||| |  |||| |||||| |||||    
T  19127382 gagctaaccgaactgaaccaaagttgttgttcggttaaccattttc 19127427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 34360358 - 34360505
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa-----attttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcg 373  Q
    ||||||| || ||| ||||||||||||||||||||||| |||||||||     ||||| |||||||||| ||||    |||||||||||||||| |||      
T  34360358 taggggtcgggatgcttcggttaacctaaaaaaccgaatcgaaccgaatggaaattttgaaatggttcgaaaaa----accgaaccgtttcaggcatgga 34360453  T
Q  374 actaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
     |||| |||||||||||||||||||  |||| ||||||||||||||||||||    
T  34360454 gctaatcgaactgaaccaaagttatagttcggttaaccgttttcttacctat 34360505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 427
Target Start/End: Original strand, 40346976 - 40347061
Alignment:
Q  342 ggaaaatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||| |||||| |||||||| |||| ||  |||||||||||||||||| |||||||||| |||||||||||| |||||||||||    
T  40346976 ggaaaaccgaaccaaaccgtttaaggtttgaaactaaccgaactgaaccagagttatgatttgattaaccgtttgcttacctatga 40347061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 4885656 - 4885503
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa----attt-taaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatg 371  Q
    |||||||||||||||||||||||||||   ||||||||||||||| |||    |||  ||||||||||||| ||||| |||||||||||||| | || ||    
T  4885656 ctaggggtgggcatggttcggttaaccatcaaaaccgaaccgaactgaaccaaattgataaaatggttcgggaaaattgaaccgaaccgtttaaagtttg 4885557  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
      | ||||| ||||||||| |||||||| |||| |||||| ||| |||||||||    
T  4885556 gaagtaaccaaactgaacctaagttatggttcggttaaccatttgcttacctat 4885503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 15254944 - 15255045
Alignment:
Q  315 aaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgt 413  Q
    |||||||||||| | |||||||||||||||| | | |||||||||| ||| |||| ||  |||||||||||||||||||||||||| |||| | ||||||    
T  15254944 aaccgaaccgaagtgttaaaatggttcggaataactgaaccgaaccatttaaggtttgaaactaaccgaactgaaccaaagttatggttcggtcaaccgt 15255043  T
Q  414 tt 415  Q
    ||    
T  15255044 tt 15255045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 42475638 - 42475775
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaa 378  Q
    ||||||||||||||||||||||||||  |     | |||||||||||| |||| ||||||||||||| |    |||||||||||| |||| ||  |||||    
T  42475638 taggggtgggcatggttcggttaaccata-----ctaaccgaaccgaagttttgaaatggttcggaata----accgaaccgtttaaggtttggaactaa 42475728  T
Q  379 ccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||||| ||||||||||||||| |||| |||||| ||| | |||||||    
T  42475729 ccgaattgaaccaaagttatggttcggttaaccatttgcatacctat 42475775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 26053728 - 26053621
Alignment:
Q  319 gaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttc 417  Q
    |||||||| | || ||||||||||||| ||  |||||||||||||| |||| ||  |||||||||| ||||||||||||||| |||| |||||||||| |    
T  26053728 gaaccgaagtgttgaaatggttcggaataaatgaaccgaaccgtttaaggtttggaactaaccgaattgaaccaaagttatggttcggttaaccgtttgc 26053629  T
Q  418 ttacctat 425  Q
    || |||||    
T  26053628 ttgcctat 26053621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 9539957 - 9540058
Alignment:
Q  310 aaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaa 409  Q
    |||||||||||||| || | || ||||||||||||| |    |||||||||||| |||| ||  |||||| ||||||||||||||||||| |||| ||||    
T  9539957 aaccgaaccgaacctaagtgttgaaatggttcggaata----accgaaccgtttaaggtttggaactaactgaactgaaccaaagttatggttcggttaa 9540052  T
Q  410 ccgttt 415  Q
    ||||||    
T  9540053 ccgttt 9540058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 10226780 - 10226856
Alignment:
Q  349 cgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||| |||||||| |||| ||  |||||||||||||||||||| ||||| |||| |||||||||||||| |||||    
T  10226780 cgaaccaaaccgtttaaggtttggaactaaccgaactgaaccaaaattatggttcggttaaccgttttcttgcctat 10226856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 16587532 - 16587579
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa 326  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  16587532 taggggtgggcatggttcggttaaccatcaaaaccgaaccgaaccgaa 16587579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 21184196 - 21184105
Alignment:
Q  331 taaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttac 421  Q
    ||||||||||||||||| | |||||||||||||| | || ||  | ||||| |||||||||||||||||| |||| |||||| ||| |||||    
T  21184196 taaaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttac 21184105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 36368499 - 36368533
Alignment:
Q  282 gggtgggcatggttcggttaacctaaaaaaccgaa 316  Q
    |||||||||||||||||||||||||||||||||||    
T  36368499 gggtgggcatggttcggttaacctaaaaaaccgaa 36368533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 36368557 - 36368609
Alignment:
Q  375 ctaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||| ||||| |||||||||||||| |||| ||||||||||||||| ||||||    
T  36368557 ctaatcgaaccgaaccaaagttatggttcggttaaccgttttcttatctatga 36368609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 40614641 - 40614732
Alignment:
Q  335 atggttcggaaaa-tcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||||||||||||| | |||||||||||||| | || ||  | ||||| |||||||||||||||||| |||| |||||| ||| |||| ||||    
T  40614641 atggttcggaaaaattgaaccgaaccgtttaaagtttggaagtaaccaaactgaaccaaagttatggttcggttaaccatttacttatctat 40614732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 27114871 - 27114916
Alignment:
Q  277 actaggggtgggcatggttcggttaacctaaaaaaccgaaccgaac 322  Q
    ||||||||||||||||||||||||||||  |  |||||||||||||    
T  27114871 actaggggtgggcatggttcggttaaccatattaaccgaaccgaac 27114916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 27114944 - 27114993
Alignment:
Q  376 taaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||||||||||||||||||||| |||| |||||| ||| ||| |||||    
T  27114944 taaccgaactgaaccaaagttatggttcggttaaccatttacttccctat 27114993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 2252125 - 2252057
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaa 347  Q
    ||||||||||||||||||| ||||||  |||||||||||| || |||| | || |||| ||| ||||||    
T  2252125 taggggtgggcatggttcgattaaccataaaaaccgaaccaaaacgaattattgaaatagtttggaaaa 2252057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 425
Target Start/End: Complemental strand, 28734097 - 28733986
Alignment:
Q  314 gaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccg 412  Q
    ||||||||| ||| | || ||||||||||||| || |||||| ||||||||  | | ||  |||||||||||| ||||||||||||| || | |||||||    
T  28734097 gaaccgaactgaagtgttgaaatggttcggaataaccgaacc-aaccgtttaggatttggaactaaccgaactaaaccaaagttatggtttggttaaccg 28733999  T
Q  413 ttttcttacctat 425  Q
    ||| ||| |||||    
T  28733998 tttgcttgcctat 28733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 45067703 - 45067554
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||  |||    
T  45067703 taggggtgggcatggttcggttaacctaaaaaaccaaaccgaaccgaaattttgaaatggttcgggaaaactgaaccgaaccgtttcaggtatgcagcta 45067604  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  45067603 accgaactgaaccaaagttatggttcggttaaccgttttcttacatatga 45067554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 45920221 - 45920077
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||| ||||||||||| ||| | ||| ||||||||||||||||||   |||    
T  45920221 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaa-----attttgaaatggttcgggaaaactgaatcgaaccgtttcaggtatggagcta 45920127  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||    
T  45920126 accgaactgaaccaaagttatggttaggttaaccgttttcttacctatga 45920077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 35086360 - 35086504
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||| ||||||||||||||||||||  |||     ||||| ||||||||||| ||| | |||||||||| |||||||||||    ||    
T  35086360 taggggtgggcatggtttggttaacctaaaaaaccgaattgaa-----attttgaaatggttcgggaaaactgaaccgaaccatttcaggtatggagtta 35086454  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  35086455 accgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 35086504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 28681816 - 28681963
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||||  |||||| |||||| |||||||||| |||||||| |||||||| || |||||||||| ||||||||||| || ||   |||    
T  28681816 taggggtgggcatggttcaattaacccaaaaaaacgaaccgaactgaaattttgaaatggtttgggaaaatcgaactgaaccgtttcaagtttggatcta 28681915  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||||||||||||||||||| || | |||||| ||| |||||||||    
T  28681916 accgaactgaaccaaagttatggtttggttaaccatttgcttacctat 28681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 32745838 - 32745990
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaa----accgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgc 372  Q
    ||||||||||||||||||||||||||| |||||    |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| | || ||     
T  32745838 ctaggggtgggcatggttcggttaacccaaaaaaccgaccgaaccaaaccgaaattttgaaatggttcggaaaaattgaaccgaaccgttttaagtttgg 32745937  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
      ||||||||||||||||||||||||| || |  ||||| ||| |||||||||    
T  32745938 agctaaccgaactgaaccaaagttatggtttggctaaccatttacttacctat 32745990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 46400008 - 46400155
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgcgacta 377  Q
    ||||||||||||||||||||||||||  |  |||||||||||||| || | || ||||||||||||||| | |||||||||||||| | || ||  | ||    
T  46400008 taggggtgggcatggttcggttaaccatattaaccgaaccgaaccaaagtgttgaaatggttcggaaaaactgaaccgaaccgtttaaagtttggaagta 46400107  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||| |||||||||||||||||| |||| |||||| ||| |||||||||    
T  46400108 accaaactgaaccaaagttatggttcggttaaccatttgcttacctat 46400155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 425
Target Start/End: Original strand, 11353645 - 11353786
Alignment:
Q  280 aggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaac 379  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||| | || |||||||| |||| |    |||||||||||   ||| ||  ||||||    
T  11353645 aggggtgggcatggttcggttaaccatattaaccgaaccgaaccgaagtgttgaaatggtttggaata----accgaaccgttcatggtttggaactaac 11353740  T
Q  380 cgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||||||||||||||||| |||| |||||||||| ||| |||||    
T  11353741 cgaactgaaccaaagttatggttcggttaaccgtttgcttgcctat 11353786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 33382522 - 33382379
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgact 376  Q
    |||||| ||||||||||||||||||||  ||||||||||||| |     ||||| ||||||||||| |||| ||||||||| ||||||| || ||   ||    
T  33382522 ctagggttgggcatggttcggttaacccgaaaaaccgaaccgta-----attttgaaatggttcgggaaaaccgaaccgaatcgtttcaagtttgaagct 33382428  T
Q  377 aaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||||||||||||||||||||||| || | |||||| ||| |||||||||    
T  33382427 aaccgaactgaaccaaagttatggtttggttaaccatttgcttacctat 33382379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 40474333 - 40474481
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaacc-----gaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgc 372  Q
    |||||||||| ||||||||||||||| ||||||||||| |     ||| ||||||||| ||||||||||| |||||| |||| ||| ||||||||| ||     
T  40474333 taggggtgggtatggttcggttaacccaaaaaaccgaatcaaatcgaatcgaaattttgaaatggttcgggaaaatcaaaccaaactgtttcaggt-tgt 40474431  T
Q  373 ga-ctaaccgaactgaaccaaagttatgattcgattaaccgttttcttac 421  Q
    || ||||||||||||||||||||||||| || | |||||| ||| |||||    
T  40474432 gagctaaccgaactgaaccaaagttatggtttggttaaccatttgcttac 40474481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 8550738 - 8550636
Alignment:
Q  314 gaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccg 412  Q
    ||||||||||||| | || |||||||| | || || ||||||||||||||| |||| ||  |||||||||||||||||||||||||| |||| |||||||    
T  8550738 gaaccgaaccgaagtgttgaaatggtttgaaataaccgaaccgaaccgtttaaggtttgaaactaaccgaactgaaccaaagttatggttcggttaaccg 8550639  T
Q  413 ttt 415  Q
    |||    
T  8550638 ttt 8550636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 27856473 - 27856534
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggtt 340  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  27856473 taggggtgggtatggttcggttaatctaaaaaatcgaaccgaaccgaaattttgaaatggtt 27856534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 31845081 - 31845234
Alignment:
Q  278 ctaggggtgggcatggttcggttaacc--taaaa---aaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatg 371  Q
    |||||||||| ||||||||||||||||  |||||   |||||||||||| | || |  | ||||| ||||||| |||||||||||||||||| | || ||    
T  31845081 ctaggggtggacatggttcggttaaccattaaaatccaaccgaaccgaatcaaattgctcaaatgtttcggaataatcgaaccgaaccgtttaaagtttg 31845180  T
Q  372 cgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
      | ||||| |||||||||||||||||| |||| |||||| ||| |||||||||    
T  31845181 gaagtaaccaaactgaaccaaagttatggttcggttaaccatttgcttacctat 31845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 32030421 - 32030342
Alignment:
Q  346 aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||||||||||||| |||  ||| ||  |||| ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  32030421 aatcgaaccgaaccatttagggtttgaaactatccgaactgaaccaaagttatggttcgattaaccgtttgcttacctat 32030342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 10166652 - 10166613
Alignment:
Q  287 ggcatggttcggttaacctaaaaaaccgaaccgaaccgaa 326  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10166652 ggcatggttcggttaacctaaaaaatcgaaccgaaccgaa 10166613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 278 - 424
Target Start/End: Original strand, 33702530 - 33702672
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    |||||||||||||||||||||   |||    
T  33702530 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttgaaatggtttgggaa----aaccgaaccgtttcaggtatggagcta 33702625  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttaccta 424  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||    
T  33702626 accgaactgaaccaaagttatggttcggttaaccattttcttaccta 33702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 280 - 427
Target Start/End: Complemental strand, 17154460 - 17154307
Alignment:
Q  280 aggggtgggcatggttcggttaacctaaaaaacc-----gaaccgaaccgaaattttaaaatggttc-ggaaaatcgaaccgaaccgtttcaggtatgcg 373  Q
    |||||||||||||||||||||||| |||||||||     |||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||      
T  17154460 aggggtgggcatggttcggttaacttaaaaaaccaaaccgaaccgaaccgaaattttgaaatggttcaggaaaaccgaaccaaaccgtttcaggtatgga 17154361  T
Q  374 actaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
      |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  17154360 gttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 17154307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 29092930 - 29092786
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgacta 377  Q
    |||||| ||||||||||||||||||||||||   ||  || ||| |||||||| |||| |||||| ||||||||||||||||||||||||||||   |||    
T  29092930 taggggcgggcatggttcggttaacctaaaa---cg--ccaaacagaaattttgaaatcgttcgggaaaatcgaaccgaaccgtttcaggtatggagcta 29092836  T
Q  378 accgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||||||||| ||||  |||||||||||||| ||||||    
T  29092835 accgaactgaaccaaagttatggttcggataaccgttttcttatctatga 29092786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 409
Target Start/End: Original strand, 23111270 - 23111404
Alignment:
Q  276 aactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcga 374  Q
    |||||||||||||||||||||||||||||  || |||| |||||||||||| | || ||||||||||||| || ||||||||||||||| | || ||  |    
T  23111270 aactaggggtgggcatggttcggttaaccataataaccaaaccgaaccgaagtgttgaaatggttcggaataaccgaaccgaaccgtttgatgtttggaa 23111369  T
Q  375 ctaaccgaactgaaccaaagttatgattcgattaa 409  Q
    |||||||||||||| |||||||||| |||| ||||    
T  23111370 ctaaccgaactgaatcaaagttatggttcggttaa 23111404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 276 - 399
Target Start/End: Complemental strand, 12356507 - 12356383
Alignment:
Q  276 aactaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcgga-aaatcgaaccgaaccgtttcaggtatgcga 374  Q
    |||||||||||||||||||||||||||||  |  || ||||||||| |||| | || ||||||||||||  || ||||||||||||||| |||| ||  |    
T  12356507 aactaggggtgggcatggttcggttaaccatattaaacgaaccgaatcgaagtgttgaaatggttcggagtaaccgaaccgaaccgtttaaggtttggaa 12356408  T
Q  375 ctaaccgaactgaaccaaagttatg 399  Q
     |||||||| |||||||||||||||    
T  12356407 ataaccgaattgaaccaaagttatg 12356383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 425
Target Start/End: Complemental strand, 8636310 - 8636168
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaa 378  Q
    |||| |||||||||||||||||||||  |  ||| ||||| ||||||| | || ||||||||| ||| |    | |||||||||| |||| ||  |||||    
T  8636310 taggagtgggcatggttcggttaaccatattaacagaaccaaaccgaagtgttgaaatggttctgaata----atcgaaccgtttaaggtttggaactaa 8636215  T
Q  379 ccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    |||| ||||||||||||||||  ||| |||||||||| |||||||||    
T  8636214 ccgagctgaaccaaagttatggctcggttaaccgtttgcttacctat 8636168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 415
Target Start/End: Complemental strand, 1801035 - 1800932
Alignment:
Q  313 cgaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaacc 411  Q
    ||||| |||||||||| |||||||||||| ||| ||||||| ||||| |||| |||| ||  ||||| |||||||||||||||||||  |||  ||||||    
T  1801035 cgaactgaaccgaaatgttaaaatggttcagaataatcgaatcgaactgtttaaggtttggaactaatcgaactgaaccaaagttatcgttcagttaacc 1800936  T
Q  412 gttt 415  Q
    ||||    
T  1800935 gttt 1800932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 27596511 - 27596587
Alignment:
Q  349 cgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||||||||||||||||| ||  ||  ||||||||||||||||||| ||||| || | |||||| ||| |||||||||    
T  27596511 cgaaccgaaccgtttcatgttggcagctaaccgaactgaaccaaaattatggtttggttaaccatttgcttacctat 27596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 27596477 - 27596519
Alignment:
Q  284 gtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaa 326  Q
    |||||||||||||||| |||| |||||||| ||||||||||||    
T  27596477 gtgggcatggttcggtaaacccaaaaaaccaaaccgaaccgaa 27596519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 3523127 - 3523270
Alignment:
Q  290 atggttcggttaacctaaaaaaccgaaccgaa-----ccgaaattttaaaatggttcgg-aaaatcgaaccgaaccgtttcaggtatgcgactaaccgaa 383  Q
    ||||||||||||||||||||||||||||||||     |||||||||| ||||||||||| ||||||||||| ||||||||||||||||   |||||||||    
T  3523127 atggttcggttaacctaaaaaaccgaaccgaatcgaaccgaaattttgaaatggttcgggaaaatcgaaccaaaccgtttcaggtatggagctaaccgaa 3523226  T
Q  384 ctgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  3523227 ctgaaccaaagttatggttcggttaaccgttttcttacctatga 3523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 278 - 427
Target Start/End: Original strand, 31069105 - 31069250
Alignment:
Q  278 ctaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaa-tcgaaccgaaccgtttcaggtatgcgact 376  Q
    |||||||||||||||||| |||||||||||||||||||||||||     ||||| ||||||||||||||| |||||| ||||| |||||||||||   ||    
T  31069105 ctaggggtgggcatggtttggttaacctaaaaaaccgaaccgaa-----attttgaaatggttcggaaaaatcgaactgaaccatttcaggtatggagct 31069199  T
Q  377 aaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  31069200 aaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 31069250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 26818531 - 26818394
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgtttcaggtatgcgactaa 378  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||    || ||||||||||||||||||   ||||    
T  26818531 taggggtgggcatggttcggttaatctaaaaaaccgaaccgaaccaaaattttgaaatggttcgggaa----aatcgaaccgtttcaggtatggagctaa 26818436  T
Q  379 ccgaactgaaccaaagttatgattcgattaaccgttttctta 420  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  26818435 ccgaactgaaccaaagttatggttcggttaaccgttttctta 26818394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 32955763 - 32955915
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaa-----ccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcaggtatgc 372  Q
    ||||||||||||||||||||| |||| |||||||||||     || |||| ||||||| ||||||||||||||| | ||||||||||||||||||| ||     
T  32955763 taggggtgggcatggttcggtcaacccaaaaaaccgaatcaaaccaaaccaaaattttgaaatggttcggaaaaaccgaaccgaaccgtttcaggt-tgg 32955861  T
Q  373 ga-ctaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
    || |||||||||||||| |||||||||| || | |||| | ||| |||||||||    
T  32955862 gagctaaccgaactgaatcaaagttatggtttggttaatcatttgcttacctat 32955915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 28747515 - 28747601
Alignment:
Q  277 actaggggtgggcatggttcggttaacctaaaaaaccgaaccgaaccgaaattttaaaatggttcggaaaatcgaaccgaaccgttt 363  Q
    ||||||| | ||||||||||| |||| | |||||| |||| |||||||||||||| ||||||||| | |||||||| ||||| ||||    
T  28747515 actagggataggcatggttcgattaatccaaaaaatcgaatcgaaccgaaattttgaaatggttcaggaaatcgaatcgaactgttt 28747601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 425
Target Start/End: Complemental strand, 33062158 - 33062046
Alignment:
Q  314 gaaccgaaccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgcgactaaccgaactgaaccaaagttatgattcgattaaccg 412  Q
    |||||||||| || | || ||||| ||||||| || ||||| ||||||||| || | ||  |||||||||||||||||||| ||||| |||| ||||| |    
T  33062158 gaaccgaaccaaagtattgaaatgtttcggaataaccgaactgaaccgtttaagatttgaaactaaccgaactgaaccaaaattatggttcggttaactg 33062059  T
Q  413 ttttcttacctat 425  Q
    ||| ||| |||||    
T  33062058 tttgcttgcctat 33062046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 42545778 - 42545740
Alignment:
Q  377 aaccgaactgaaccaaagttatgattcgattaaccgttt 415  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  42545778 aaccgaactgaaccaaagttatggttcggttaaccgttt 42545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 8465186 - 8465223
Alignment:
Q  388 accaaagttatgattcgattaaccgttttcttacctat 425  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  8465186 accaaagttatgattcggttaaccgtttgcttacctat 8465223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 7554 - 7395
Alignment:
Q  274 gtaactaggggtgggcatggttcggttaacctaaaaaacc-----gaaccgaaccgaaattttaaaatggttcggaaaatc-gaaccgaaccgtttcagg 367  Q
    |||| |||||||||||||||||| ||||||||||||||||     |||||||||||||||||| ||||||||||| ||| | ||| |||||||||||| |    
T  7554 gtaattaggggtgggcatggttcagttaacctaaaaaaccaaaccgaaccgaaccgaaattttgaaatggttcgggaaaactgaatcgaaccgtttcacg 7455  T
Q  368 tatgcgactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctatga 427  Q
    ||||   ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  7454 tatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatga 7395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 425
Target Start/End: Complemental strand, 54236 - 54084
Alignment:
Q  279 taggggtgggcatggttcggttaacctaaaaaaccgaaccgaa-----ccgaaattttaaaatggttcggaa-aatcgaaccgaaccgtttcaggtatgc 372  Q
    ||||||||||||||||| ||||||||  |  ||||||||||||     | ||| | || ||||||||| ||| || | ||||||||||| | |||| ||     
T  54236 taggggtgggcatggtttggttaaccatattaaccgaaccgaattgaactgaagtattgaaatggttcagaataaccaaaccgaaccgtctaaggtttgg 54137  T
Q  373 gactaaccgaactgaaccaaagttatgattcgattaaccgttttcttacctat 425  Q
     |||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  54136 aactaaccgaactgaaccaaagttatggttcggttaaccgtttgcttacctat 54084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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