View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_26 (Length: 435)
Name: NF1158_low_26
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 109 - 426
Target Start/End: Complemental strand, 570972 - 570656
Alignment:
| Q |
109 |
aaaagggttagtgagggttaaactaagtcaaatatatgacatggccaaaaggatttgaccaaatcaaatattatcacaaataataaaatacactaatttt |
208 |
Q |
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| T |
570972 |
aaaagggttagtgggggttaaactaagtcaaatatatgacatggccaaaaggatttgaccaaataaaatattatcacaaataataaaatacactaatttt |
570873 |
T |
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| Q |
209 |
atccttaaatttgtgaccatacaaatttcatattatcaagagactgcttataatatttacatagtttatggactaaatttgagaaatggtgatagtttat |
308 |
Q |
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| T |
570872 |
atccttaaatttgtgaccatacaaatttcatatcatcaagagactgcttataatatttacatagtttatggactaaatttgagaaatggtgatagtttat |
570773 |
T |
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| Q |
309 |
gaatcgattaattctaatttataatctattggaaaagtgtcacaacaacaacttagaaagttatcgataatttttaaagggttagaaagataaatcataa |
408 |
Q |
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| T |
570772 |
gaatcgattaattctaatttataatctattggaaaagtgtca-aacaacaacttagaaagttatcggtaatttttaaagggttagaaagataaatcataa |
570674 |
T |
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| Q |
409 |
ctcatggataacctatgc |
426 |
Q |
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| T |
570673 |
ctcatggataacctatgc |
570656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 12123239 - 12123295
Alignment:
| Q |
250 |
gactgcttataatatttacatagtttatggactaaatttgagaaatggtgatagttt |
306 |
Q |
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| T |
12123239 |
gactacttatcatatttacatagtttagggactaaattgaagaatgggtgatagttt |
12123295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 55095311 - 55095206
Alignment:
| Q |
6 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtgccctgagca |
105 |
Q |
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| T |
55095311 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtgccctgagca |
55095212 |
T |
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| Q |
106 |
ggcaaa |
111 |
Q |
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|||||| |
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| T |
55095211 |
ggcaaa |
55095206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 35341780 - 35341727
Alignment:
| Q |
128 |
aaactaagtcaaatatatgacatggccaaaaggatttgaccaaatcaaatattat |
182 |
Q |
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| T |
35341780 |
aaactaagtcaaattt-tgatatgaccaaaaggatttgactaaatcaaatattat |
35341727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 47819398 - 47819438
Alignment:
| Q |
247 |
agagactgcttataatatttacatagtttatggactaaatt |
287 |
Q |
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| T |
47819398 |
agagactacttattatatttacatagtttagggactaaatt |
47819438 |
T |
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