View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_low_27 (Length: 414)
Name: NF1158_low_27
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 147 - 404
Target Start/End: Original strand, 4702035 - 4702292
Alignment:
| Q |
147 |
gcaagtttgtattgaaataatagtcttttctcgataactttctgacttttcattgtttccttgtacctgttgttgctcatgtgattgacttcattttttg |
246 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4702035 |
gcaagtttgtattgagataatagtcttttctcggtaactttcttacttttcattgtttccttgtacctgttgttgctcatgtgattgacttcattttttg |
4702134 |
T |
|
| Q |
247 |
aatccactccatgtttaatttaaggggaaattgcattaactcccttgtaagttttcccctaaacacttcnnnnnnngtttaggctgttttgctctattgc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4702135 |
aatccactccatgtttaatttaaggggaaattgcattaactcccctgtaagttttcccctaaacacttcaaaaaaagtttaggctgttttgctctattgc |
4702234 |
T |
|
| Q |
347 |
cctacagggcactagactggcaaagagattttgcggcctaatcctgttttgctctctg |
404 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4702235 |
cctacagggcactagactagaccagagattttgcggcctaatcctgttttgctctctg |
4702292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 4701894 - 4701953
Alignment:
| Q |
24 |
aaacatacctgtaaacaattaagcactgaacgcatcatcaaaaccaacacgtcagacaca |
83 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
4701894 |
aaacatacttgttaacaattaagcacagaacgcggcatcaaaaccaatacgtcagacaca |
4701953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 4701965 - 4702016
Alignment:
| Q |
78 |
gacacattttcaacagaagtgtcgtgcttgctgcaacttgtatttaaaataaagag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4701965 |
gacacattttcaacagaagtgtcgtgcta----caacttgtatttaaaataaagag |
4702016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University