View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_28 (Length: 404)

Name: NF1158_low_28
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_28
NF1158_low_28
[»] chr6 (2 HSPs)
chr6 (29-394)||(5335834-5336199)
chr6 (53-153)||(20568251-20568352)
[»] chr4 (1 HSPs)
chr4 (327-385)||(18336924-18336982)
[»] chr2 (2 HSPs)
chr2 (327-385)||(26614392-26614450)
chr2 (340-385)||(23927191-23927236)
[»] chr1 (1 HSPs)
chr1 (330-381)||(13090228-13090279)
[»] chr8 (1 HSPs)
chr8 (46-95)||(4600297-4600346)
[»] chr5 (1 HSPs)
chr5 (46-84)||(436597-436635)
[»] scaffold0045 (2 HSPs)
scaffold0045 (47-91)||(63856-63900)
scaffold0045 (47-91)||(71188-71232)


Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 394
Target Start/End: Original strand, 5335834 - 5336199
Alignment:
Q  29 aaaaacgtgtatgaaaatgtccttgtgagtttagctcagttagtagggacattgtagaatataggcaggggcggagattgaaactcgaacatcccattaa 128  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5335834 aaaaacgtgtatgaaaatgtccttgtgagcttagctcagttagtagggacattgtagaatatatgcaggggcggagattgaaactcgaacatcccattaa 5335933  T
Q  129 ttcaccttaaaaaagtgaatttctaactcaagagaatgaagggtttttaggatatctccttcgagaacagatttacaaatacagattgggaaaactctac 228  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5335934 ttcaccttaaaaaagtgaatttctaactcaagagaatgaagggtgtttaggatatctctttcgagaacggatttacaaatacagattgggaaaactctac 5336033  T
Q  229 cccatcttcaactcaaattcctatcctaggagagctccattctcaagacaattcagtcctctctctttcttaccaggtgacaaagcagaatcccccagat 328  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5336034 cccatcttcaactcaaattcctgtcctaggagagctccattctcaagacaattcagtcctctctctttcttaccaggcgacaaagcagaatcccccagat 5336133  T
Q  329 aactagtatttttgtatgagccgtacgagatgatattctcatatacggttctcagggtgtcctttg 394  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5336134 aactagtatttttgtatgagccgtacgagattatattctcatatacggttctcagggtgtcctttg 5336199  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 20568352 - 20568251
Alignment:
Q  53 gtgagtttagctcagttagtagggacattgtagaatataggcagggg-cggagattgaaactcgaacatcccattaattcaccttaaaaaagtgaatttc 151  Q
    ||||| ||||||||||| ||| |||||||| | |||||| ||||||| ||| | | ||| | |||||| |||| | |||||||||| ||| |||||||||    
T  20568352 gtgagcttagctcagttggtaaggacattgcataatatatgcaggggtcggggttcgaaccccgaacaccccacttattcaccttataaaggtgaatttc 20568253  T
Q  152 ta 153  Q
    ||    
T  20568252 ta 20568251  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 18336924 - 18336982
Alignment:
Q  327 ataactagtatttttgtatgagccgtacgagatgatattctcatatacggttctcaggg 385  Q
    |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  18336924 ataactggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggg 18336982  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 26614450 - 26614392
Alignment:
Q  327 ataactagtatttttgtatgagccgtacgagatgatattctcatatacggttctcaggg 385  Q
    |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  26614450 ataactggtatttttgtttgagccgtacgagatgaaattctcatatacggttctcaggg 26614392  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 23927236 - 23927191
Alignment:
Q  340 ttgtatgagccgtacgagatgatattctcatatacggttctcaggg 385  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||    
T  23927236 ttgtttgagccgtacgagatgaaattctcatatacggttcttaggg 23927191  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 13090279 - 13090228
Alignment:
Q  330 actagtatttttgtatgagccgtacgagatgatattctcatatacggttctc 381  Q
    |||||||||||||| |||| | |||||||||| |||||||||||||||||||    
T  13090279 actagtatttttgtttgagtcatacgagatgaaattctcatatacggttctc 13090228  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 4600346 - 4600297
Alignment:
Q  46 tgtccttgtgagtttagctcagttagtagggacattgtagaatataggca 95  Q
    ||||| |||||||||||||||||| ||||||||| |||| ||||||||||    
T  4600346 tgtccatgtgagtttagctcagttggtagggacaatgtataatataggca 4600297  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 436635 - 436597
Alignment:
Q  46 tgtccttgtgagtttagctcagttagtagggacattgta 84  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  436635 tgtcctcgtgagtttagctcagttggtagggacattgta 436597  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 63856 - 63900
Alignment:
Q  47 gtccttgtgagtttagctcagttagtagggacattgtagaatata 91  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||    
T  63856 gtcctcgtgagtttagctcagttggtagggacaatgtataatata 63900  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 71188 - 71232
Alignment:
Q  47 gtccttgtgagtttagctcagttagtagggacattgtagaatata 91  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||    
T  71188 gtcctcgtgagtttagctcagttggtagggacaatgtataatata 71232  T

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