View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_low_29 (Length: 402)
Name: NF1158_low_29
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 29580381 - 29580604
Alignment:
| Q |
29 |
agagtgcaggactacttagaagcagttactctgatggatatcaactaggacctaatttttgatttcgtttaggctaatattaattgttagcaaactggtg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29580381 |
agagtgcaggactacttagaagcagttactctgatggatatcaactaggacctaattttttatttcgtttaggctaatattaattgtt------------ |
29580468 |
T |
|
| Q |
129 |
gttatgttaattctcaggatttaaactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaattgagtttcccagtaggacctagatgc |
228 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29580469 |
--------aattctcaggatttgaactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaattgagtttcccagtaggacctagatgc |
29580560 |
T |
|
| Q |
229 |
agaactcggttaacattttacatattttttgagacaatacaagt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29580561 |
agaactcggttaacattttacatattttttgagacaatacaagt |
29580604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 29580669 - 29580723
Alignment:
| Q |
337 |
ttcctacacttgattttaagctaaaggattcaaatggttgcaacctcctgccttt |
391 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29580669 |
ttcctacatttgattttaagctaaaggattcaaatggttacaacctcctgccttt |
29580723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University