View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_3 (Length: 604)
Name: NF1158_low_3
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 39296266 - 39296856
Alignment:
| Q |
1 |
acacttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctcagcttttcctcttattcgtcatcttcaccacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39296266 |
acacttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctcagcttttccttttattcgtcatcttcaccacaa |
39296365 |
T |
|
| Q |
101 |
tgtttttgagcgaatccaccgttttgccggttggttagctcttatccttctatggtttttcattcttttaactgtaagttacgagcctcgttcaaaaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
39296366 |
cgtttttgagcgaatccaccgttttgccggttggttagctcttatccttctatggtttttcattcttttaacagtaagttgtgagcctagttcaaaaacc |
39296465 |
T |
|
| Q |
201 |
tatcacataaccatttcaaagatgattaagaaacaagaatgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296466 |
tatcacataaccatttcaaagatgattaagaaacaagagtgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaag |
39296565 |
T |
|
| Q |
301 |
ttcaagttagtgtcacagcaccatcaaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaattagtccatcaccatt |
400 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39296566 |
tacaagttagtgtcacagcaccatcaaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaataagtccatcaccatt |
39296665 |
T |
|
| Q |
401 |
atcagaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttca |
500 |
Q |
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| T |
39296666 |
atcagaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttca |
39296765 |
T |
|
| Q |
501 |
cctcctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacag |
591 |
Q |
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| T |
39296766 |
cctcctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacag |
39296856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 4 - 591
Target Start/End: Original strand, 39289389 - 39289976
Alignment:
| Q |
4 |
cttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctcagcttttcctcttattcgtcatcttcaccacaatgt |
103 |
Q |
| |
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||||||| ||||| ||||| |||||||||||||| ||||| ||| |||||||| ||||||| |||||||||| ||||||| ||||| ||||||||||| |
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| T |
39289389 |
cttctccggagatactcggtgttgcattcgccatcctctcactcattacactctcttcgcttgcagcttttccagttattcgacatctccaccacaatgt |
39289488 |
T |
|
| Q |
104 |
ttttgagcgaatccaccgttttgccggttggttagctcttatccttctatggtttttcattcttttaactgtaagttacgagcctcgttcaaaaacctat |
203 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| || ||| |||||||||||||| |
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| T |
39289489 |
tttcgagcgaatccaccgtttttccggttggttagctcttatccttctatggttattcattcttcttactataagttatgaacctagttcaaaaacctat |
39289588 |
T |
|
| Q |
204 |
cacataaccatttcaaagatgattaagaaacaagaatgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaagttc |
303 |
Q |
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||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39289589 |
cacttaaccattttaaagatggttaagaaacaagaatgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaagtac |
39289688 |
T |
|
| Q |
304 |
aagttagtgtcacagcaccatcaaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaattagtccatcaccattatc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39289689 |
aagttagtgtcacagcaccatcaaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaataagtccatcaccattatc |
39289788 |
T |
|
| Q |
404 |
agaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacct |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289789 |
agaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacct |
39289888 |
T |
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| Q |
504 |
cctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacag |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289889 |
cctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacag |
39289976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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