View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_33 (Length: 388)

Name: NF1158_low_33
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_33
NF1158_low_33
[»] chr5 (3 HSPs)
chr5 (26-290)||(2563070-2563352)
chr5 (150-196)||(465908-465954)
chr5 (232-268)||(11715018-11715054)
[»] chr7 (3 HSPs)
chr7 (147-193)||(28613601-28613647)
chr7 (147-196)||(34083592-34083641)
chr7 (124-196)||(42656469-42656539)
[»] chr8 (1 HSPs)
chr8 (147-196)||(7646160-7646209)
[»] chr2 (2 HSPs)
chr2 (151-196)||(36114594-36114639)
chr2 (154-196)||(3611180-3611222)
[»] chr1 (4 HSPs)
chr1 (147-196)||(34619445-34619494)
chr1 (147-196)||(9572175-9572224)
chr1 (147-196)||(38578481-38578530)
chr1 (146-194)||(37841954-37842002)
[»] chr6 (5 HSPs)
chr6 (148-196)||(507174-507222)
chr6 (149-193)||(28621179-28621223)
chr6 (147-196)||(769093-769142)
chr6 (147-196)||(9093623-9093672)
chr6 (147-195)||(2735024-2735072)
[»] chr4 (3 HSPs)
chr4 (152-196)||(17884022-17884066)
chr4 (150-196)||(47800584-47800630)
chr4 (147-196)||(47119032-47119081)
[»] chr3 (4 HSPs)
chr3 (150-196)||(42808933-42808979)
chr3 (147-196)||(30956693-30956742)
chr3 (147-196)||(30972505-30972554)
chr3 (147-196)||(32095258-32095307)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 2563352 - 2563070
Alignment:
Q  26 atcatatgatagagtatgtttagaccgacttatttgaatttatctactaatattagctttacaataatttcgnnnnnnnnttatgacatgttcataagtt 125  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  2563352 atcatatgatacagtatgtttagaccgacttttttgaatttatctactaatattagctttacaataatttcgaaaaaaaattatgacatgttcataagtt 2563253  T
Q  126 attttcatagactctccaagata------------------tagcttatacaaaaacaattgaactttgttttaccttttgttatagaatacgctaatat 207  Q
    |||||||||||||||||||||||                  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2563252 attttcatagactctccaagatagcttgtgaaaatagtttatagcttatacaaaaacaattgaacttcgttttaccttttgttatagaatacgctaatat 2563153  T
Q  208 gcttatcatgataaacgttgatgcataagctgcgaattaagttgtttatccatacagggtcatagaaacatacctgtgtgaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2563152 gcttatcatgataaacgttgatgcataagctgcgaattaagttgtttatccatacagggtcatagaaacatacctgtgtgaag 2563070  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 465954 - 465908
Alignment:
Q  150 agcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||||||||| |||||| ||||| ||||||| ||||||    
T  465954 agcttatacaaaaacaatttaactttattttatcttttgtcatagaa 465908  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 11715018 - 11715054
Alignment:
Q  232 ataagctgcgaattaagttgtttatccatacagggtc 268  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacagggtc 11715054  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 28613601 - 28613647
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttata 193  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||    
T  28613601 tataacttatacaaaaacaatttaactttgttttatcttttgttata 28613647  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 34083592 - 34083641
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||| |||||||| |||||| ||||| |||||| |||||||    
T  34083592 tatagcttatacacaaacaatttaactttattttatcttttgctatagaa 34083641  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 42656539 - 42656469
Alignment:
Q  124 ttattttcatagactctccaagatatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||  ||||||||||||  |||||||||||||  |||  ||||| ||||| ||||||||||||||    
T  42656539 ttattttcataagctctccaagata--gcttatacaaaaatgatttgactttattttatcttttgttatagaa 42656469  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 7646209 - 7646160
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||| |||||||||||||||| |||||| ||||||||||| ||||||||    
T  7646209 tatagattatacaaaaacaatttaactttattttaccttttcttatagaa 7646160  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 36114594 - 36114639
Alignment:
Q  151 gcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||    
T  36114594 gcttatacaaaaacaatttaactttattttatcttttgttatagaa 36114639  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 3611222 - 3611180
Alignment:
Q  154 tatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  3611222 tatacaaaaacaatttaactttattttaccttttgctatagaa 3611180  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 34619445 - 34619494
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||||||||||||| ||| || ||||| ||||||||||||||    
T  34619445 tatagcttatacaaaaacaatttaaccttattttatcttttgttatagaa 34619494  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 9572175 - 9572224
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||||||| ||||| |||||| ||||| |||||| |||||||    
T  9572175 tatagcttatacaaaagcaatttaactttattttatcttttgctatagaa 9572224  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 38578530 - 38578481
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||||||| |||| |||||| | ||| ||||||||||||||    
T  38578530 tatagcttatacaaaaataatttaactttatgttatcttttgttatagaa 38578481  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 37842002 - 37841954
Alignment:
Q  146 atatagcttatacaaaaacaattgaactttgttttaccttttgttatag 194  Q
    ||||||||||||| ||||||||| |||||| ||||| | ||||||||||    
T  37842002 atatagcttatacgaaaacaatttaactttattttatcatttgttatag 37841954  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 507222 - 507174
Alignment:
Q  148 atagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||||||||||  |||||| ||||| ||||||||||||||    
T  507222 atagcttatacaaaaacaatctaactttattttatcttttgttatagaa 507174  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 28621179 - 28621223
Alignment:
Q  149 tagcttatacaaaaacaattgaactttgttttaccttttgttata 193  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||    
T  28621179 tagcttatacaaaaacaatttaactttattttatcttttgttata 28621223  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 769142 - 769093
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||||||| || | |||||| ||||| ||||||||||||||    
T  769142 tatagcttatacaaaaaaaaattaactttattttagcttttgttatagaa 769093  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 9093623 - 9093672
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||| ||||||||| |||||| ||||| |||||| |||||||    
T  9093623 tatagcttatacgaaaacaatttaactttattttatcttttgatatagaa 9093672  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 2735072 - 2735024
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttataga 195  Q
    ||||| ||||||||||| |||| |||||| ||||| |||||||||||||    
T  2735072 tatagattatacaaaaataatttaactttattttatcttttgttataga 2735024  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 17884066 - 17884022
Alignment:
Q  152 cttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||    
T  17884066 cttatacaaaaacaatttaactttattttatcttttgttatagaa 17884022  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 47800630 - 47800584
Alignment:
Q  150 agcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||||||| || |||||| ||||| ||||||||||||||    
T  47800630 agcttatacaaaaacattttaactttattttatcttttgttatagaa 47800584  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 47119032 - 47119081
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||||||  ||||||||| |||||||||||| |||||| |||||||    
T  47119032 tatagcttatatgaaaacaatttaactttgttttatcttttgatatagaa 47119081  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 42808979 - 42808933
Alignment:
Q  150 agcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  42808979 agcttatataaaaacaatttaactttattttatcttttgttatagaa 42808933  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 30956693 - 30956742
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||| ||||||||||||||| |||||| ||||| |||||| |||||||    
T  30956693 tatagcctatacaaaaacaatttaactttattttatcttttgctatagaa 30956742  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 30972505 - 30972554
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    |||||| ||||||||||||||| |||||| ||||| |||||| |||||||    
T  30972505 tatagcctatacaaaaacaatttaactttattttatcttttgctatagaa 30972554  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 32095258 - 32095307
Alignment:
Q  147 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 196  Q
    ||||| |||||||||||||||| |||||  ||||| ||||||||||||||    
T  32095258 tatagtttatacaaaaacaatttaacttaattttatcttttgttatagaa 32095307  T

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