View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_38 (Length: 381)
Name: NF1158_low_38
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 372
Target Start/End: Original strand, 32078792 - 32079138
Alignment:
| Q |
29 |
aatatttgtacaataaattaagaagtgtgcaattgttattgtttgtcttaaaaatacgatccatattttctcctatttcttttgatctagcatgcatcat |
128 |
Q |
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| T |
32078792 |
aatatttgtacaataaattaagaagtgtgcaattgttattgtttgtcttaaaaatacaatccatattttctcttatttcttttgatctagcatgcatcat |
32078891 |
T |
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| Q |
129 |
cgataataaacatacaatccatattttctcttattccttctcttatttccatgaatttgattatcatt---taacgttgtatacacgtgagcaaaatgat |
225 |
Q |
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| T |
32078892 |
cgataataaacatacaatccatattttctcttattccttctcttatttccatgaatttgattatcattaattaacgttgtatatacgtgagcaaaatgat |
32078991 |
T |
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| Q |
226 |
tgtaattgttgagaaaattgaaaactaatagaaaatgataaaggggagaaaatgagagaaaatattgaagtctgaatcttaattttttgattacttgtta |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32078992 |
tgtaattgttgagaaaattgaaaactaatagaaaatgataaaagggagaaaatgagagaaaatattgaagtctgaatcttaattttttgattacttgtta |
32079091 |
T |
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| Q |
326 |
ttgaagctgttgcaattatgtatggtgattctatgagatagtataat |
372 |
Q |
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| T |
32079092 |
atgaagctgttgcagttatgtatggtgattctatgagatagtataat |
32079138 |
T |
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