View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_41 (Length: 372)

Name: NF1158_low_41
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_41
NF1158_low_41
[»] chr8 (12 HSPs)
chr8 (98-269)||(32987286-32987459)
chr8 (98-254)||(39022026-39022184)
chr8 (98-270)||(15260689-15260865)
chr8 (98-223)||(8550555-8550682)
chr8 (98-217)||(4836596-4836715)
chr8 (98-217)||(4842041-4842160)
chr8 (98-217)||(7058165-7058284)
chr8 (98-186)||(7614119-7614207)
chr8 (123-217)||(2750101-2750195)
chr8 (175-223)||(1208829-1208877)
chr8 (98-162)||(15181842-15181906)
chr8 (190-223)||(39658430-39658463)
[»] chr1 (9 HSPs)
chr1 (98-255)||(18056835-18056992)
chr1 (100-270)||(45889649-45889823)
chr1 (98-270)||(23319923-23320099)
chr1 (98-217)||(22348090-22348209)
chr1 (98-217)||(179659-179778)
chr1 (102-217)||(8402206-8402321)
chr1 (98-186)||(30802447-30802535)
chr1 (98-162)||(37639393-37639457)
chr1 (98-162)||(35198131-35198195)
[»] chr7 (11 HSPs)
chr7 (98-255)||(30428924-30429081)
chr7 (98-255)||(46024078-46024237)
chr7 (98-215)||(46573397-46573514)
chr7 (98-217)||(15974831-15974950)
chr7 (98-186)||(33797982-33798070)
chr7 (175-217)||(48305356-48305398)
chr7 (175-217)||(48691112-48691154)
chr7 (98-162)||(5757438-5757502)
chr7 (102-162)||(32090633-32090693)
chr7 (175-217)||(28396842-28396884)
chr7 (98-143)||(48691043-48691088)
[»] scaffold0194 (1 HSPs)
scaffold0194 (98-270)||(27658-27834)
[»] scaffold0097 (1 HSPs)
scaffold0097 (98-270)||(13664-13838)
[»] chr2 (6 HSPs)
chr2 (98-270)||(20709825-20709999)
chr2 (98-217)||(25192943-25193062)
chr2 (98-217)||(18298006-18298125)
chr2 (175-217)||(4579721-4579763)
chr2 (98-162)||(4281738-4281802)
chr2 (98-162)||(25995338-25995402)
[»] chr4 (12 HSPs)
chr4 (98-270)||(21097191-21097367)
chr4 (98-224)||(637905-638031)
chr4 (98-270)||(4168409-4168585)
chr4 (98-270)||(38485510-38485688)
chr4 (98-255)||(22181101-22181259)
chr4 (139-270)||(18923351-18923484)
chr4 (101-252)||(27764294-27764449)
chr4 (98-218)||(26447306-26447426)
chr4 (98-217)||(51836985-51837105)
chr4 (98-217)||(45256026-45256145)
chr4 (98-186)||(36621627-36621715)
chr4 (98-162)||(50563679-50563743)
[»] chr3 (14 HSPs)
chr3 (98-255)||(39099248-39099409)
chr3 (98-223)||(50754057-50754182)
chr3 (98-217)||(52987545-52987664)
chr3 (98-270)||(8718152-8718336)
chr3 (98-270)||(9070039-9070223)
chr3 (98-217)||(7045196-7045314)
chr3 (98-217)||(51362334-51362452)
chr3 (98-215)||(19385212-19385329)
chr3 (98-184)||(16277342-16277428)
chr3 (98-146)||(17627197-17627245)
chr3 (183-217)||(31852242-31852276)
chr3 (98-162)||(23699379-23699443)
chr3 (98-162)||(23717834-23717898)
chr3 (98-162)||(23736290-23736354)
[»] chr5 (10 HSPs)
chr5 (98-270)||(23335542-23335721)
chr5 (98-255)||(13362821-13362988)
chr5 (159-270)||(25017072-25017185)
chr5 (100-223)||(2826956-2827079)
chr5 (150-255)||(42512277-42512384)
chr5 (98-208)||(28070057-28070167)
chr5 (98-163)||(16668743-16668808)
chr5 (98-162)||(18465506-18465570)
chr5 (98-148)||(25017181-25017231)
chr5 (175-223)||(34329247-34329293)
[»] chr6 (6 HSPs)
chr6 (98-223)||(24737580-24737705)
chr6 (98-217)||(33346266-33346385)
chr6 (98-223)||(877259-877384)
chr6 (100-162)||(29157279-29157341)
chr6 (98-162)||(18611240-18611304)
chr6 (98-146)||(34399692-34399740)
[»] scaffold0238 (1 HSPs)
scaffold0238 (98-196)||(25148-25246)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 98 - 269
Target Start/End: Complemental strand, 32987459 - 32987286
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  32987459 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctaactaaaac 32987360  T
Q  198 ataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  32987359 ataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactcatatgagtcttcatct 32987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 39022026 - 39022184
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||| ||||||||||| | |||| ||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  39022026 tcacaatcatcagatctagtgtacatgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 39022125  T
Q  198 ataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaact 254  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39022126 ataaagctctccctctctctctacaattttcaacattctggaaaagaaaacgaagaact 39022184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 15260865 - 15260689
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||| ||||| | ||||||| |||||||   |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||     
T  15260865 tcacaaccatcaaatctagtgtacacgtttaataatccaaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctctcactaaaat 15260766  T
Q  198 ataaagctctccctct--ctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  15260765 ataaaactctccctctctctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 15260689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 8550555 - 8550682
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8550555 tcacaaccatcagatctagtgtacacgtgtaataatcataagcttctcaaattacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 8550654  T
Q  198 ataaagctctccctc--tctctacaatt 223  Q
    |||||| ||||||||  |||||||||||    
T  8550655 ataaagttctccctctttctctacaatt 8550682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 4836715 - 4836596
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  || |||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  4836715 tcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 4836616  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  4836615 ataaagctctccctctctct 4836596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 4842160 - 4842041
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  || |||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  4842160 tcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 4842061  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  4842060 ataaagctctccctctctct 4842041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 7058165 - 7058284
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||||||| |||||| | |||||||||||||||  ||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  7058165 tcacaaccatccgatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttcaaacacttctctcactaaaac 7058264  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  7058265 ataaagctctccctctctct 7058284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 7614119 - 7614207
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttct 186  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  7614119 tcacaaccatcagatctaatgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttct 7614207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 2750101 - 2750195
Alignment:
Q  123 cgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctct 217  Q
    |||||||||||  ||| ||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||    
T  2750101 cgtgtaataatcatagacttctcaaactacaccaaatcaaacttcatttactttaaacatttctctcactaaaacataatgctctccctcactct 2750195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 1208829 - 1208877
Alignment:
Q  175 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1208829 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 1208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 15181842 - 15181906
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| |||||||    
T  15181842 tcacaagcatcagatctagtgtacacgtgtaataatcttaggtttctcaaactacaccaaatcaa 15181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 39658463 - 39658430
Alignment:
Q  190 actaaaacataaagctctccctctctctacaatt 223  Q
    ||||||||||||||||||||||||||||||||||    
T  39658463 actaaaacataaagctctccctctctctacaatt 39658430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 18056835 - 18056992
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18056835 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 18056934  T
Q  198 ataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 255  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18056935 ataaaactctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 18056992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 100 - 270
Target Start/End: Original strand, 45889649 - 45889823
Alignment:
Q  100 acaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacat 199  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  45889649 acaaccatcagatctagtatacatgtgtaataatcttaggcttctcaaactacaccaaatcaaatttcatttccttcaaacatttctctcactaaaacat 45889748  T
Q  200 aaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||| |||||  ||||||||||||||||||| |||||| |||||||||||||||||||   ||||||||||||||    
T  45889749 aaagttctccctctctctctacaattttcaatattctgaaaaagaaaacgaagaactcagatgagtcttcatctc 45889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 23320099 - 23319923
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  23320099 tcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgctttaaacatttctctcactaaaac 23320000  T
Q  198 ataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||||| ||||||  ||||||| |||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  23319999 ataaagctatccctctttctctactattttcaaaattctggaaaagaaaacgaagaactcagatgagtcttcatctc 23319923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 22348090 - 22348209
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||| ||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22348090 tcacaaccatcatatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 22348189  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  22348190 ataaagctctccctctctct 22348209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 179659 - 179778
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||   | |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  179659 tcacaaccatcagatctagtgtacacgtgtaataatcccaagcttctcaaactacaccaaatcaaacttcatttgcttaaaacatttctctcactaaaac 179758  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  179759 ataaagctctccctctctct 179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 8402321 - 8402206
Alignment:
Q  102 aaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataa 201  Q
    |||||||||||||| | ||||| |||||||||  |||| |||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||    
T  8402321 aaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactaaaccaaatcaaacttcatctgcttcaaacatttctctcactaaaacataa 8402222  T
Q  202 agctctccctctctct 217  Q
    ||||||| ||||||||    
T  8402221 agctctctctctctct 8402206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 30802447 - 30802535
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttct 186  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  30802447 tcacaaccatcagatctagtgtacacgtgtaataatcttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttct 30802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 37639393 - 37639457
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||||| | |||||||||||||||| ||| ||||||||| ||||| |||||||    
T  37639393 tcacaaccatcagatctagtgtacacgtgtaataattatagacttctcaaactacaccaaatcaa 37639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 35198195 - 35198131
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    ||||| |||||||||||| | |||||||||||||||  ||| ||| ||||| ||||| |||||||    
T  35198195 tcacagccatcagatctagtgtacacgtgtaataatcctagacttttcaaactacacaaaatcaa 35198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 30428924 - 30429081
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  30428924 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 30429023  T
Q  198 ataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 255  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30429024 ataaagctccccctctctctacaattttcaacattctagaaaagaaaacgaagaactc 30429081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 46024078 - 46024237
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||||||||||| || | |||||||||||||||  ||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  46024078 tcacaaccatcagatatagtgtacacgtgtaataatcctagacttctcaaactacattaaatcaaacttcatttgcttcaaatatttctctcactaaaac 46024177  T
Q  198 ataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc 255  Q
    |||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  46024178 ataaagttctccctctatctctacaattttcaacattttggaaaagaaaacgaagaactc 46024237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 46573514 - 46573397
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46573514 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 46573415  T
Q  198 ataaagctctccctctct 215  Q
    ||||||||||||||||||    
T  46573414 ataaagctctccctctct 46573397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 15974950 - 15974831
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||| || || | ||||| ||||||||| |||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  15974950 tcacaaccatcatatttagtgtacacatgtaataatcttaggcttatcaaagtacaccaaatcaaacttcatctgcttcaaacatttctctcactaaaac 15974851  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||| | ||||||    
T  15974850 ataaagctctctccctctct 15974831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 33797982 - 33798070
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttct 186  Q
    |||||||||||||||||| |||||||||||||||||  ||| ||||||||| ||||  |||||||||||||||||||||||||||||||    
T  33797982 tcacaaccatcagatctagtatacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaacatttct 33798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 48305356 - 48305398
Alignment:
Q  175 tcaaacatttctctcactaaaacataaagctctccctctctct 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  48305356 tcaaacatttctctcaataaaacataaagctctccctctctct 48305398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 48691112 - 48691154
Alignment:
Q  175 tcaaacatttctctcactaaaacataaagctctccctctctct 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  48691112 tcaaaaatttctctcactaaaacataaagctctccctctctct 48691154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 5757438 - 5757502
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||||| | |||||||||||||||  ||| ||||||||| ||||| |||||||    
T  5757438 tcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaa 5757502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 32090633 - 32090693
Alignment:
Q  102 aaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||| ||||| |||||||||||||||||  ||||||||||||| ||||| |||||||    
T  32090633 aaccatcaaatctagtatacacgtgtaataatcataggcttctcaaactacaccaaatcaa 32090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 28396842 - 28396884
Alignment:
Q  175 tcaaacatttctctcactaaaacataaagctctccctctctct 217  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  28396842 tcaaacatttctctcaataaaacataaagttctccctctctct 28396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 48691043 - 48691088
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttc 143  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||    
T  48691043 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttc 48691088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 27658 - 27834
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||| || ||||||| | |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27658 tcacaactataagatctagtgtacacgtgtaataattctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 27757  T
Q  198 ataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  27758 ataaatctctccctctttctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 27834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 13664 - 13838
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | ||||| |||||||||  || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13664 tcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 13763  T
Q  198 ataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||   ||||||||||||||    
T  13764 ataaagttctccctctctctacaattttcaactctctggaaaagaaaacgaagaactcagatgagtcttcatctc 13838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 20709825 - 20709999
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | ||||| |||||||||  || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20709825 tcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 20709924  T
Q  198 ataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||   ||||||||||||||    
T  20709925 ataaagttctccctctctctacaattttcaactctctggaaaagaaaacgaagaactcagatgagtcttcatctc 20709999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 25192943 - 25193062
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25192943 tcacaaccattagatctagtgtacacgtgtaataattctaggcttctcaaattacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 25193042  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  25193043 ataaagctctccctctctct 25193062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 18298125 - 18298006
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  18298125 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaagcgtttctctcactaaaac 18298026  T
Q  198 ataaagctctccctctctct 217  Q
    ||||| ||||||||||||||    
T  18298025 ataaatctctccctctctct 18298006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 4579763 - 4579721
Alignment:
Q  175 tcaaacatttctctcactaaaacataaagctctccctctctct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4579763 tcaaacatttctctcactaaaacataaagctctccctctctct 4579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 4281802 - 4281738
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||||| | |||||||||||||||  |||| |||||||| ||||  |||||||    
T  4281802 tcacaaccatcagatctagtgtacacgtgtaataatcctaggtttctcaaactacagcaaatcaa 4281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 25995338 - 25995402
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    ||||||||||||||| || | |||||||||||||||  |||||| |||||| ||||| |||||||    
T  25995338 tcacaaccatcagatttagtgtacacgtgtaataatcctaggctactcaaattacaccaaatcaa 25995402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 21097191 - 21097367
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||| ||||||| | |||||||||||||||| || |||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21097191 tcacaaccattagatctagtttacacgtgtaataattctaagcttattaaattacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 21097290  T
Q  198 ataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  21097291 ataaagctctccctctctctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 21097367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 637905 - 638031
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  637905 tcacaaccatcagatctagtgtacatgtgtaataattttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 638004  T
Q  198 ataaagctctccctctctctacaattt 224  Q
    |||||||||||||||||||||||||||    
T  638005 ataaagctctccctctctctacaattt 638031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 4168409 - 4168585
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | ||||| |||||||||  |||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  4168409 tcacaaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgtttcaaacatttctctcactaaaac 4168508  T
Q  198 ataaagctctccctc--tctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||||| || |||  |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  4168509 ataaagctttcactctatctctacaattttcaacattctggaaaagaaaacgaagaactcagatgagtcttcatctc 4168585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 38485688 - 38485510
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcact--aaa 195  Q
    |||||||||||||||||| | |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||    
T  38485688 tcacaaccatcagatctaatgtacacgtgtaataatcctaggcttctcaaaatacattaaatcaaacttcatttgcttcaaacatttctctcactaaaaa 38485589  T
Q  196 acataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||||| |||||  ||||||||||||||||||| ||| ||||||| |||||||| |||||   ||||||||||||||    
T  38485588 acataaagatctccctctctctctacaattttcaatattatggaaaaaaaaacgaaaaactcatatgagtcttcatctc 38485510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 255
Target Start/End: Complemental strand, 22181259 - 22181101
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||||||||||| || | |||||||||||||||  |||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  22181259 tcacaaccatcagatttagtgtacacgtgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgcctcaaacatttctctcactaaaac 22181160  T
Q  198 ataaagctct--ccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 255  Q
    |||||||| |  | |||||||||||| |||||||||||||||||||||||||||||||||    
T  22181159 ataaagcttttcctctctctctacaa-tttcaacattctggaaaagaaaacgaagaactc 22181101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 18923351 - 18923484
Alignment:
Q  139 gcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaa 238  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||| ||    
T  18923351 gcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctgtcactaaaacataaaactatccctctctctacaattttcaacattctgaaa 18923450  T
Q  239 aagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||||||||||||||   ||||||||||||||    
T  18923451 aagaaaacgaagaactcagatgagtcttcatctc 18923484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 27764294 - 27764449
Alignment:
Q  101 caaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacata 200  Q
    ||||||||||||||| | |||||||||||||||  || |||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  27764294 caaccatcagatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaaccttatttgcttcaaacatttctctcactaaaacata 27764393  T
Q  201 aagctctccctctctcta----caattttcaacattctggaaaagaaaacgaagaa 252  Q
    ||| |||||||||||||     ||||||||||||||||| ||||||||||||||||    
T  27764394 aagttctccctctctctctctccaattttcaacattctgaaaaagaaaacgaagaa 27764449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 26447426 - 26447306
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||| |||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26447426 tcacaaccatcagatctagtgtacacgtgtaataattctaggcttcacaaattacaccaaatcaaatttcatttgcttcaaacatttctctcactaaaac 26447327  T
Q  198 ataaagctctccctctctcta 218  Q
    |||||| ||||||||||||||    
T  26447326 ataaagttctccctctctcta 26447306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 51837105 - 51836985
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttca-tttgcttcaaacatttctctcactaaaa 196  Q
    ||||||||||||||| || | |||||||||||||||  ||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  51837105 tcacaaccatcagatttaatgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattttacttcaaacatttctctcactaaaa 51837006  T
Q  197 cataaagctctccctctctct 217  Q
    |||||||||||||||||||||    
T  51837005 cataaagctctccctctctct 51836985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 45256026 - 45256145
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||| ||||||| || | |||||||||||||||  ||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  45256026 tcacaactatcagatatagtgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaaacttcatttgcttcaaacatttctctcactaaaac 45256125  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||| ||| ||||||    
T  45256126 ataaagctccccccctctct 45256145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 36621715 - 36621627
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttct 186  Q
    |||||||||||||||||| | |||||||||||||||  || |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  36621715 tcacaaccatcagatctaatgtacacgtgtaataatcctatgcttcttaaactacaccaaatcaaacttcatttgcttcaaacatttct 36621627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 50563743 - 50563679
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||||| | |||||||||||||||| |||| |||||||| ||||| |||||||    
T  50563743 tcacaaccatcagatctagtgtacacgtgtaataattataggtttctcaaactacaccaaatcaa 50563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 39099248 - 39099409
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||    
T  39099248 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacactaaatcaaacttcatttgtttaaaacatttctctcactaaaac 39099347  T
Q  198 ataaagctctccctc----tctctacaattttcaacattctggaaaagaaaacgaagaactc 255  Q
    |||||||||||||||    |||||||||||||||||||||| ||| | |||| |||||||||    
T  39099348 ataaagctctccctctctttctctacaattttcaacattctcgaagaaaaaatgaagaactc 39099409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 50754057 - 50754182
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  50754057 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgattcaaacacttctctcactaaaac 50754156  T
Q  198 ataaagctctccctctctctacaatt 223  Q
    ||||||||||||||||||||||||||    
T  50754157 ataaagctctccctctctctacaatt 50754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 52987664 - 52987545
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  52987664 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctctcactaaaac 52987565  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  52987564 ataaagctctccctctctct 52987545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 8718152 - 8718336
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||| ||||||||||  ||||||||| ||| ||||| ||||||||||||||||| || |||||||||||||||||||||    
T  8718152 tcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgtttaaaacatttctctcactaaaac 8718251  T
Q  198 ataaag----------ctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    ||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||    
T  8718252 ataaagctttccctctctctctctctctctacaattttcaacattctggaaaagaaaacgaagaaatcagatgagtcttcatctc 8718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 9070039 - 9070223
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||| ||||||||||  ||||||||| ||| ||||| ||||||||||||||||| || |||||||||||||||||||||    
T  9070039 tcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgtttaaaacatttctctcactaaaac 9070138  T
Q  198 ataaag----------ctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    ||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||    
T  9070139 ataaagctttccctctctctctctctctctacaattttcaacattctggaaaagaaaacgaagaaatcagatgagtcttcatctc 9070223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 7045314 - 7045196
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||| | ||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  7045314 tcacaaccatcagatctagtgtacacgtgtaataatcgtaggcttctcagactacatcaaatcaaactt-atttgcttcaaacatttctctcactaaaac 7045216  T
Q  198 ataaagctctccctctctct 217  Q
    ||||||||||||||||||||    
T  7045215 ataaagctctccctctctct 7045196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 51362452 - 51362334
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||||||||||| || | |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51362452 tcacaaccatcagatttagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 51362353  T
Q  198 ataaagctctccctctctct 217  Q
    ||||| || |||||||||||    
T  51362352 ataaa-ctttccctctctct 51362334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 19385329 - 19385212
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||||||||||| || | |||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||| |||||| |||||||||||    
T  19385329 tcacaaccatcagatttagtgtacacgtgtaataattctaggcttctcaaactacatcaaatcaaacttcatttgcttcaatcatttccctcactaaaac 19385230  T
Q  198 ataaagctctccctctct 215  Q
    ||||| ||||||||||||    
T  19385229 ataaaactctccctctct 19385212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 16277428 - 16277342
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacattt 184  Q
    |||||||||||| ||||| | |||||||||||||||  || |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  16277428 tcacaaccatcatatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgtttcaaacattt 16277342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 17627245 - 17627197
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctca 146  Q
    |||||||||||||||||| | |||||||||||||||| |||| ||||||    
T  17627245 tcacaaccatcagatctagtgtacacgtgtaataattctaggtttctca 17627197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 31852242 - 31852276
Alignment:
Q  183 ttctctcactaaaacataaagctctccctctctct 217  Q
    ||||||||||||||||||||| |||||||||||||    
T  31852242 ttctctcactaaaacataaagttctccctctctct 31852276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 23699379 - 23699443
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||| ||||| | |||||||||||||||  ||||||| ||||| ||||  |||||||    
T  23699379 tcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 23717834 - 23717898
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||| ||||| | |||||||||||||||  ||||||| ||||| ||||  |||||||    
T  23717834 tcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23717898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 23736290 - 23736354
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||| ||||| | |||||||||||||||  ||||||| ||||| ||||  |||||||    
T  23736290 tcacaaccatcatatctaatgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaa 23736354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 23335721 - 23335542
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcact-aaaa 196  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||| ||||    
T  23335721 tcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaagttcatttgcatcaaacatttctctcactaaaaa 23335622  T
Q  197 cataaagctctcc----ctctctctacaattttcaacattctggaaaagaaaacgaagaactc--gtgagtcttcatctc 270  Q
    |||||||||||||    ||||||||||||||||||||||| ||||||||||||| ||||||||   ||||||||||||||    
T  23335621 cataaagctctccctctctctctctacaattttcaacattatggaaaagaaaacaaagaactcagatgagtcttcatctc 23335542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 13362821 - 13362988
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | || ||||||||||||  ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  13362821 tcacaaccatcagatctagtgtatacgtgtaataatcataggcttctcaaactacaccaaatcaaaattcatttgcttcaaacatttctctcactaaaac 13362920  T
Q  198 ataaagc----------tctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc 255  Q
    |||||||          |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13362921 ataaagctttccctctgtctctctctctctacaattttcaacattctggaaaagaaaacgaagaactc 13362988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 25017185 - 25017072
Alignment:
Q  159 tcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagaactc--g 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       
T  25017185 tcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctccctctctctacaattttcaacattctggaaaagaaaacgaagtactcaga 25017086  T
Q  257 tgagtcttcatctc 270  Q
    ||||||||||||||    
T  25017085 tgagtcttcatctc 25017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 2827079 - 2826956
Alignment:
Q  100 acaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacat 199  Q
    |||||||||||||||| | |||||||||||| || |||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  2827079 acaaccatcagatctagtgtacacgtgtaattatcttaggcttctcaaactacaccaaatcaaatttcatttgcttcaaacatttatctcactaaaacat 2826980  T
Q  200 aaagctctccctctctctacaatt 223  Q
    ||||||||||||||||||||||||    
T  2826979 aaagctctccctctctctacaatt 2826956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 42512277 - 42512384
Alignment:
Q  150 tacactaaatcaaacttcatttgcttcaaacatttctctcactaaaacataaagctctcc--ctctctctacaattttcaacattctggaaaagaaaacg 247  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42512277 tacaccaaatcaaacttcatttacttcaaacatttctctcactaaaacctaaagctctccctctctctctacaattttcaacattctggaaaagaaaacg 42512376  T
Q  248 aagaactc 255  Q
    ||||||||    
T  42512377 aagaactc 42512384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 28070167 - 28070057
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    ||||||| |||||||||| | |||||||||||||||  ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28070167 tcacaactatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 28070068  T
Q  198 ataaagctctc 208  Q
    |||||||||||    
T  28070067 ataaagctctc 28070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 16668808 - 16668743
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaa 163  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| ||||||||    
T  16668808 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaa 16668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 18465570 - 18465506
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||||| | ||||||||||||||| |||| ||||||||| ||||| |||||||    
T  18465570 tcacaaccatcagatctagtgtacacgtgtaataatcttagacttctcaaactacaccaaatcaa 18465506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 25017231 - 25017181
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaa 148  Q
    |||||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  25017231 tcacaaccatcagatctagtgtacacgtgtaataattttaggtttctcaaa 25017181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 34329247 - 34329293
Alignment:
Q  175 tcaaacatttctctcactaaaacataaagctctccctctctctacaatt 223  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  34329247 tcaaacatttctctcactaaaacataaagctct--ctctctctacaatt 34329293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 24737705 - 24737580
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24737705 tcacaaccatcagatctagtgtacacgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 24737606  T
Q  198 ataaagctctccctctctctacaatt 223  Q
    ||||| ||||||||||||||||||||    
T  24737605 ataaaactctccctctctctacaatt 24737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 33346385 - 33346266
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||||| ||||| | |||||||||||||||| ||||||||||||| |||   |||||||||||| |||||||||||||||||||||||||||||    
T  33346385 tcacaaccatcaaatctagtgtacacgtgtaataattataggcttctcaaactacgtcaaatcaaacttcgtttgcttcaaacatttctctcactaaaac 33346286  T
Q  198 ataaagctctccctctctct 217  Q
    |||||| |||||||||||||    
T  33346285 ataaagttctccctctctct 33346266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 877259 - 877384
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaac 197  Q
    |||||||||| |||||   | ||||||| |||||||  || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  877259 tcacaaccattagatcaggtgtacacgtataataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 877358  T
Q  198 ataaagctctccctctctctacaatt 223  Q
    | ||||||||||||||||||||||||    
T  877359 aaaaagctctccctctctctacaatt 877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 29157279 - 29157341
Alignment:
Q  100 acaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||| | |||||||||||||||  ||||||||||||| ||||| |||||||    
T  29157279 acaaccatcagatctagtgtacacgtgtaataatactaggcttctcaaactacaccaaatcaa 29157341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 18611240 - 18611304
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaa 162  Q
    |||||||||||||||||| | |||||||||||||||  |||||||||||||  |||| |||||||    
T  18611240 tcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaaccacaccaaatcaa 18611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 34399692 - 34399740
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctca 146  Q
    |||||| ||||||||||| | |||||||||||||||  |||||||||||    
T  34399692 tcacaatcatcagatctagtgtacacgtgtaataatcctaggcttctca 34399740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 25246 - 25148
Alignment:
Q  98 tcacaaccatcagatctactatacacgtgtaataattttaggcttctcaaaatacactaaatcaaacttcatttgcttcaaacatttctctcactaaaa 196  Q
    ||||||||||||||| || | ||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  25246 tcacaaccatcagatttagtgtacacgtgtcataatcttaggtttctcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaa 25148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University