View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_42 (Length: 371)

Name: NF1158_low_42
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_42
NF1158_low_42
[»] chr5 (4 HSPs)
chr5 (6-282)||(39082353-39082627)
chr5 (6-100)||(9370277-9370370)
chr5 (6-96)||(19907393-19907483)
chr5 (6-96)||(27692247-27692337)
[»] chr7 (9 HSPs)
chr7 (16-101)||(46071651-46071736)
chr7 (6-96)||(44379578-44379668)
chr7 (6-96)||(23559751-23559841)
chr7 (6-96)||(44370724-44370814)
chr7 (229-265)||(31061476-31061512)
chr7 (229-265)||(31203280-31203316)
chr7 (231-265)||(31144056-31144090)
chr7 (231-265)||(31161882-31161916)
chr7 (231-265)||(31243985-31244019)
[»] chr6 (2 HSPs)
chr6 (16-100)||(15599024-15599108)
chr6 (6-96)||(20714111-20714201)
[»] chr4 (4 HSPs)
chr4 (6-100)||(17626014-17626108)
chr4 (16-100)||(20617219-20617303)
chr4 (6-96)||(49227448-49227538)
chr4 (6-56)||(15857481-15857531)
[»] chr3 (1 HSPs)
chr3 (6-100)||(18322728-18322822)
[»] chr2 (2 HSPs)
chr2 (6-100)||(1197652-1197746)
chr2 (6-100)||(1287978-1288072)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 39082353 - 39082627
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaatgcac 105  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  39082353 ctcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaactataaagggtgaatatgaataatgacttaagcaagtaattaaaatgcac 39082452  T
Q  106 aattcacacattatcaaagaacacaaacatgccaattcaggatgcattcg---nnnnnnnnctagtaactccctttgcttatggttcagggcatgttcat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||     |||||||||||||||||||||||    
T  39082453 aattcacacattatcaaagaacacaaacatgccaattcaggatgcattcggaaaaaaaaaactagtaactcc-----cttatggttcagggcatgttcat 39082547  T
Q  203 gataaaggattacttaaatgagataactggacttgtttatgatctaggcattaaggattacttcctatgtgcttatgggt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39082548 gataaaggattacttaaatgagataactggacttgtttatgatgtaggcattaaggattacttcctatgtgcttatgggt 39082627  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 9370370 - 9370277
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||    
T  9370370 ctcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaacta-gaagggtgaatatgaacaatgagttaagcaagtaattaaaa 9370277  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 19907483 - 19907393
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| |||||||| ||||||||||| ||||||||||||    
T  19907483 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggtgaataagaacaatgactcaagcaagtaatt 19907393  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 27692337 - 27692247
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  27692337 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 27692247  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 46071736 - 46071651
Alignment:
Q  16 atgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaat 101  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  46071736 atgcacaattcacacataaattacaagtaacaaaatcaaactagaaacggtgaatatgaacaatgacttgagcaagtaattaaaat 46071651  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 44379668 - 44379578
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| |||||||| ||||||||||| ||||||||||||    
T  44379668 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggtgaataagaacaatgactcaagcaagtaatt 44379578  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 23559751 - 23559841
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  23559751 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 23559841  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 44370814 - 44370724
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  44370814 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 44370724  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 31061512 - 31061476
Alignment:
Q  229 ctggacttgtttatgatctaggcattaaggattactt 265  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31061512 ctggacttgtttatgatctagggattaaggattactt 31061476  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 31203280 - 31203316
Alignment:
Q  229 ctggacttgtttatgatctaggcattaaggattactt 265  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31203280 ctggacttgtatatgatctaggcattaaggattactt 31203316  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 31144090 - 31144056
Alignment:
Q  231 ggacttgtttatgatctaggcattaaggattactt 265  Q
    |||||||||||||||||||| ||||||||||||||    
T  31144090 ggacttgtttatgatctagggattaaggattactt 31144056  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 31161916 - 31161882
Alignment:
Q  231 ggacttgtttatgatctaggcattaaggattactt 265  Q
    |||||||||||||||||||| ||||||||||||||    
T  31161916 ggacttgtttatgatctagggattaaggattactt 31161882  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 31244019 - 31243985
Alignment:
Q  231 ggacttgtttatgatctaggcattaaggattactt 265  Q
    |||||||||||||||||||| ||||||||||||||    
T  31244019 ggacttgtttatgatctagggattaaggattactt 31243985  T

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Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 15599108 - 15599024
Alignment:
Q  16 atgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  15599108 atgcacaattcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcaagtaattaaaa 15599024  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 20714201 - 20714111
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  20714201 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 20714111  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 17626014 - 17626108
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  17626014 ctcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcatgtaattaaaa 17626108  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 20617219 - 20617303
Alignment:
Q  16 atgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||| ||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  20617219 atgctcaattcacacataaattacaagtaacaaaattaaactagaaatggtgaatatgaacaatgacttgagcaagtaattaaaa 20617303  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 49227538 - 49227448
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 96  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  49227538 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 49227448  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 15857481 - 15857531
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaac 56  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| ||||    
T  15857481 ctcctacaaaatgcacaattcacacataaataataaataacaaaataaaac 15857531  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 18322822 - 18322728
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  18322822 ctcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcatgtaattaaaa 18322728  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 1197652 - 1197746
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  1197652 ctcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcatgtaattaaaa 1197746  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 1287978 - 1288072
Alignment:
Q  6 ctccaacaatatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 100  Q
    |||| |||| |||||||||||||||||||||||  | |||||||||||||||| ||| ||||||||||| || |||||| |||| ||||||||||    
T  1287978 ctcctacaaaatgcacaattcacacataaattatgagtaacaaaatcaaactagaaatggtgaatatgagcactgacttgagcatgtaattaaaa 1288072  T

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