View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_low_43 (Length: 365)
Name: NF1158_low_43
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 127 - 358
Target Start/End: Complemental strand, 33224541 - 33224310
Alignment:
| Q |
127 |
cagaccacaaacccaaaccctaaatatccactaacaggttcaacatcagcataagaaagtatgcttcttcccaaacacacctgccgcctcacataacaac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
33224541 |
cagaccacaaacccaaaccctaaatatccactaacaggttcaacatcagcataagaaagtatgcttcttcccaaacacatcagccgcctcacataagaac |
33224442 |
T |
|
| Q |
227 |
agtgttgttaannnnnnnctttctttgagttctctacttcttctttgcagcttaatcgaatcatattcccattccatttacagtttataatcgaaccata |
326 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33224441 |
agtgttgttaatttttttttctctttgagttctctgcttcttctttgcagcttaatcgaatcatattcccattccatttacagtttataatcgaaccata |
33224342 |
T |
|
| Q |
327 |
ttcctttcttctcttttatttcttgttttctg |
358 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
33224341 |
ttcctttcttctcttctatttcttgttttctg |
33224310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 127 - 358
Target Start/End: Original strand, 20623653 - 20623885
Alignment:
| Q |
127 |
cagaccacaaacccaaaccctaaatatccactaacaggttcaacatcagcataagaaagtatgcttcttcccaaacacacctgccgcctcacataacaac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
20623653 |
cagaccacaaacccaaaccctaaatatccactaacaggttcaacatcagcataagaaagtatgcttcttcccaaacacaccagccacctcacataagaac |
20623752 |
T |
|
| Q |
227 |
agtgttgttaannnnnnn-ctttctttgagttctctacttcttctttgcagcttaatcgaatcatattcccattccatttacagtttataatcgaaccat |
325 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20623753 |
agtgttgttaattttttttctttctttgagttctctgcttcttctttgcagcttaattgaatcatattcccattccatttacagtttataatcgaaccat |
20623852 |
T |
|
| Q |
326 |
attcctttcttctcttttatttcttgttttctg |
358 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
20623853 |
attcctttcttctcttctatttcttgttttctg |
20623885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 127 - 355
Target Start/End: Complemental strand, 12904734 - 12904512
Alignment:
| Q |
127 |
cagaccacaaacccaaaccctaaatatccactaacaggttcaacatcagcataagaaagtatgcttcttcccaaacacacctgccgcctcacataacaac |
226 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| || ||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12904734 |
cagatcacaaacccaaaccctaaatattcactaatagattcaacatcggcattagaaagtatgcttcttcccaaacacaccagccgcctcacataacaat |
12904635 |
T |
|
| Q |
227 |
agtgttgttaannnnnnnctttctttgagttctctacttcttctttgcagcttaatcgaatcatattcccattccatttacagtttataatcgaaccata |
326 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12904634 |
agtgttgttaatttt----tttctttg--ttctctgcttcttctttgcagcttaatcaaatcatattcccattccatttacagtttataatcgaaccata |
12904541 |
T |
|
| Q |
327 |
ttcctttcttctcttttatttcttgtttt |
355 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
12904540 |
ttcctttcttctcttctatttcttgtttt |
12904512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 186 - 358
Target Start/End: Original strand, 34856493 - 34856665
Alignment:
| Q |
186 |
tatgcttcttcccaaacacacctgccgcctcacataacaacagtgttgttaannnnnnnctttctttgagttctctacttcttctttgcagcttaatcga |
285 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||| || |||| | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34856493 |
tatgcttcttcccaaacacaccagccacctcacataagaacaatgctgtttatttttttctttctttgagttctctgcttcttctttgcagcttaatcga |
34856592 |
T |
|
| Q |
286 |
atcatattcccattccatttacagtttataatcgaaccatattcctttcttctcttttatttcttgttttctg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34856593 |
atcatattcccattccatttacagtttataatcgaaccatattcctttcttctcttctatttcttgttttctg |
34856665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 28896807 - 28896863
Alignment:
| Q |
70 |
tagatgtgatcagagtcaggagtagtgccctgagcaggcaaaccaagagcagcacca |
126 |
Q |
| |
|
|||||||||||||| |||||| ||||||| | |||||| ||||||||||||| |||| |
|
|
| T |
28896807 |
tagatgtgatcagaatcaggattagtgcctttagcaggtaaaccaagagcagaacca |
28896863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 55095311 - 55095192
Alignment:
| Q |
6 |
actaacacacacattaattagacattacatagtaataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtgccctgagca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55095311 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtgccctgagca |
55095212 |
T |
|
| Q |
106 |
ggcaaaccaagagcagcacc |
125 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
55095211 |
ggcaaaccaagagcagcacc |
55095192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 14885845 - 14885914
Alignment:
| Q |
127 |
cagaccacaaacccaaaccctaaatatccactaacaggttcaacatcagcataagaaagtatgcttcttcc |
197 |
Q |
| |
|
||||||||||||| ||||| || |||||||| ||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
14885845 |
cagaccacaaacc-aaaccttagatatccaccaacttgatcaacatcaacataagaaagtatgcttcttcc |
14885914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University