View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_low_44 (Length: 362)
Name: NF1158_low_44
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 46909320 - 46909476
Alignment:
| Q |
87 |
aggagtgaataagacatcgcttttggtggccagtttgtcaatttaaataatacnnnnnnnnnngacaaaattttaaataattcttattacttcattgaat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46909320 |
aggagtgaataagacatcgcttttggtggccagtttgtcaatttaaataatacttttttttttgacaaaattttaaataattcttattacttcattgaat |
46909419 |
T |
|
| Q |
187 |
gaatggaaaagtgaatatacatatacaagagtgaagaggtggataacgaccctaact |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46909420 |
gaatggaaaagtgaatatacatatacaagagtgaagaggtggataaccaccctaact |
46909476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University