View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_45 (Length: 360)
Name: NF1158_low_45
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 45167270 - 45167519
Alignment:
| Q |
9 |
accacagacaacaaagggtccggtccatttgacagaacagccaaagctggatggatttcttagatttagatgcgtggggtttttattttctcctttctca |
108 |
Q |
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| T |
45167270 |
accacagacaacaaagggtc-----catttgacagaacagccaaagctggatggatttcttagatttagatgcgtgggatttttattttctcctttctca |
45167364 |
T |
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| Q |
109 |
ctaattttgaactattgaccgataatggtactgctactttttctcaattgccatgcctaatgttgtctaggtaagtgtctggttgaaacttgtttgtctt |
208 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45167365 |
ctaattttgaactattgaccgataatggtactactactttttctcaattgccatgcctaatgtcgtctaggtaagtgtctggttgaaacttgtttgtctt |
45167464 |
T |
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| Q |
209 |
ttttaacttgtcc---gatagagtaatgtctcactctcaactttcctttttagct |
260 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45167465 |
ttttaacttgtccgatgatagagtaatgtctcactctcaactttcctttttagct |
45167519 |
T |
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