View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_51 (Length: 331)

Name: NF1158_low_51
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_51
NF1158_low_51
[»] chr8 (1 HSPs)
chr8 (29-331)||(8126693-8126990)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 8126990 - 8126693
Alignment:
Q  29 aactatgaacaaagaaaataataccaaagatttgttgataaccaatccgatgattacttgtgagataattgtgtaaatttatgggtaacttaacctttan 128  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8126990 aactacgaacaaagaaaataataccaaagatttgttgataaccaatccgatgattacttgtgagataattgtgtaaatttatgggtaacttaacctttat 8126891  T
Q  129 nnnnnnataggtgaatacaacttttccattaaaatttatttttaattcccatttaggagggaagaggaatattacttgcttgcttgcttcatatatttct 228  Q
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||  |  ||||||    
T  8126890 ttttt-ataggtgaatacaacttttccattaaaatttatttttaattcccaattaggagggaagaggaatattacttgctt----gcttgcttcatttct 8126796  T
Q  229 ataaaccccatttgatttataaaataataatttgtggggattcatttaatttctttaagcaactagctacaaaaaatcataaagtattcaaaactcaatg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8126795 ataaaccccatttgatttataaaataataatttgtggggattcatttaatttctttaagcaactagctacaaaaaatcataaagtattcaaaactcaatg 8126696  T

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