View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_53 (Length: 329)

Name: NF1158_low_53
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_53
NF1158_low_53
[»] chr5 (4 HSPs)
chr5 (96-329)||(39082225-39082458)
chr5 (119-318)||(9370277-9370486)
chr5 (222-314)||(19907393-19907485)
chr5 (222-314)||(27692247-27692339)
[»] chr6 (2 HSPs)
chr6 (119-318)||(15599024-15599231)
chr6 (222-314)||(20714111-20714203)
[»] chr7 (4 HSPs)
chr7 (119-319)||(46071651-46071861)
chr7 (222-314)||(44379578-44379670)
chr7 (222-314)||(23559749-23559841)
chr7 (222-314)||(44370724-44370816)
[»] chr2 (2 HSPs)
chr2 (119-318)||(1197539-1197746)
chr2 (119-318)||(1287865-1288072)
[»] chr4 (4 HSPs)
chr4 (119-318)||(20617098-20617303)
chr4 (149-318)||(17625931-17626108)
chr4 (222-314)||(49227448-49227540)
chr4 (222-274)||(15857479-15857531)
[»] chr3 (1 HSPs)
chr3 (178-318)||(18322728-18322874)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 39082225 - 39082458
Alignment:
Q  96 caccgcaatagctcaaacccgataagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcccaaggaagtaagtattcttttataaaa 195  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  39082225 caccgcaatagctcaaatccgagaagggttcttttcgagatttgatgttgaagctatacaatttgcatcttccttaggaaataagtattcttttataaaa 39082324  T
Q  196 tgcttcaagtttcttatgtttgaccatactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaaca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |    
T  39082325 tgcttcaagtttcttatgtttgaccatactcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaactataaagggtgaatatgaata 39082424  T
Q  296 atgacttaagcaagtaattaaaatgcacaattca 329  Q
    ||||||||||||||||||||||||||||||||||    
T  39082425 atgacttaagcaagtaattaaaatgcacaattca 39082458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 119 - 318
Target Start/End: Complemental strand, 9370486 - 9370277
Alignment:
Q  119 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcccaaggaagtaagtattcttttataaaatgcttcaagtttcttatgtttga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||     |||| |||||||||||||||||||||||||||||||    
T  9370486 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcctcaggaagtt----ttctgttataaaatgcttcaagtttcttatgtttga 9370391  T
Q  219 ------ccat---------actcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgactta 303  Q
          ||||         ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||||||||||||||| |||    
T  9370390 gtttgaccattgtattactactcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaacta-gaagggtgaatatgaacaatgagtta 9370292  T
Q  304 agcaagtaattaaaa 318  Q
    |||||||||||||||    
T  9370291 agcaagtaattaaaa 9370277  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 19907485 - 19907393
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| |||||||| ||||||||||| ||||||||||||    
T  19907485 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggtgaataagaacaatgactcaagcaagtaatt 19907393  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 27692339 - 27692247
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  27692339 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 27692247  T

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Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 119 - 318
Target Start/End: Complemental strand, 15599231 - 15599024
Alignment:
Q  119 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcc-caaggaagtaa-gtattcttttataaaatgcttcaagtttcttatgttt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||  ||| |||||||||||||||||||||||||||||||||||||    
T  15599231 aagggttctgttcgagatttgatgttgaagctatacaatttgcatcttcctcagggacataaagtattcttttataaaatgcttcaagtttcttatgttt 15599132  T
Q  217 gac------catactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagt 310  Q
    |||      ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  15599131 gactttgttcatactccttcaaaatgcacaattcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcaagt 15599032  T
Q  311 aattaaaa 318  Q
    ||||||||    
T  15599031 aattaaaa 15599024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 20714203 - 20714111
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  20714203 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 20714111  T

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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 119 - 319
Target Start/End: Complemental strand, 46071861 - 46071651
Alignment:
Q  119 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcc-caaggaagt-aagtattcttttataaaatgcttcaagtttcttatgttt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||  | |||||||||||||||||||||||||||||||||||||||    
T  46071861 aagggttctgttcgagatttgatgttgaagctatacaatttgcatcttcctcagggacatgaagtattcttttataaaatgcttcaagtttcttatgttt 46071762  T
Q  217 gac------catactc--ctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaa 308  Q
    |||      |||||||  || |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  46071761 gactttgtccatactctccttcaaaatgcacaattcacacataaattacaagtaacaaaatcaaactagaaacggtgaatatgaacaatgacttgagcaa 46071662  T
Q  309 gtaattaaaat 319  Q
    |||||||||||    
T  46071661 gtaattaaaat 46071651  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 44379670 - 44379578
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| |||||||| ||||||||||| ||||||||||||    
T  44379670 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggtgaataagaacaatgactcaagcaagtaatt 44379578  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 23559749 - 23559841
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  23559749 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 23559841  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 44370816 - 44370724
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  44370816 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 44370724  T

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Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 1197539 - 1197746
Alignment:
Q  119 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcc-caagga-agtaagtattcttttataaaatgcttcaagtttcttatgttt 216  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||| || ||| || |||||||||| |||||||||||||||||||||||||| |    
T  1197539 aagggctctgttcgagatttgatgttgaagttatacaatttgcatcttcctcagggacaggaagtattcttgtataaaatgcttcaagtttcttatgtct 1197638  T
Q  217 gac------catactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagt 310  Q
    |||      |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| ||    
T  1197639 gactttcctcatactcctacaaaatgcacaattcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcatgt 1197738  T
Q  311 aattaaaa 318  Q
    ||||||||    
T  1197739 aattaaaa 1197746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 1287865 - 1288072
Alignment:
Q  119 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcc-caaggaagt-aagtattcttttataaaatgcttcaagtttcttatgttt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||  | ||||||||||||||||||||||||||||||||||||| |    
T  1287865 aagggttctgttcgagatttgatgttgaagctatacaatttgcatcttcctcagggacatgaagtattcttttataaaatgcttcaagtttcttatgtct 1287964  T
Q  217 gac------catactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagt 310  Q
    |||      |||||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||| ||||||||||| || |||||| |||| ||    
T  1287965 gactttcctcatactcctacaaaatgcacaattcacacataaattatgagtaacaaaatcaaactagaaatggtgaatatgagcactgacttgagcatgt 1288064  T
Q  311 aattaaaa 318  Q
    ||||||||    
T  1288065 aattaaaa 1288072  T

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Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 20617098 - 20617303
Alignment:
Q  119 aagggttcttttcgagatttgatgttgaagctatacaatttgcatcttcc-caagga-agtaagtattcttttataaaatgcttcaagtttcttatgttt 216  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| || ||  |||||||||||||||||||||||||||||||||||    
T  20617098 aagggttctgttcaagatttgatgttgaagctatacaatttgcatcttcctcaaggacaggaa--attcttttataaaatgcttcaagtttcttatgttt 20617195  T
Q  217 gac------catactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagt 310  Q
    |||      ||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||||    
T  20617196 gactttgtccatactccttcaaaatgctcaattcacacataaattacaagtaacaaaattaaactagaaatggtgaatatgaacaatgacttgagcaagt 20617295  T
Q  311 aattaaaa 318  Q
    ||||||||    
T  20617296 aattaaaa 20617303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 149 - 318
Target Start/End: Original strand, 17625931 - 17626108
Alignment:
Q  149 ctatacaatttgcatcttcc-caaggaagt-aagtattcttttataaaatgcttcaagtttcttatgtttgac------catactcctacaaaatgcaca 240  Q
    |||||||||||||||||||| || |||  | ||||||||||||||||||||||||||||||||||||| ||||      |||||||||||||||||||||    
T  17625931 ctatacaatttgcatcttcctcagggacatgaagtattcttttataaaatgcttcaagtttcttatgtctgactttcctcatactcctacaaaatgcaca 17626030  T
Q  241 attcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 318  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  17626031 attcacacataaattacaagtaacaaaatcaaactagaaatggtgaatatgaacaatgacttgagcatgtaattaaaa 17626108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 49227540 - 49227448
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaactataaaaggtgaatatgaacaatgacttaagcaagtaatt 314  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||| | ||| || ||||| ||||||||||| ||||||||||||    
T  49227540 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaacaagaaagggagaataagaacaatgactcaagcaagtaatt 49227448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 15857479 - 15857531
Alignment:
Q  222 tactcctacaaaatgcacaattcacacataaattacaaataacaaaatcaaac 274  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  15857479 tactcctacaaaatgcacaattcacacataaataataaataacaaaataaaac 15857531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 18322874 - 18322728
Alignment:
Q  178 aagtattcttttataaaatgcttcaagtttcttatgtttgac------catactcctacaaaatgcacaattcacacataaattacaaataacaaaatca 271  Q
    |||||||||||||||||||||||||||||| ||||||  |||      |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18322874 aagtattcttttataaaatgcttcaagttttttatgtcggactttcctcatactcctacaaaatgcacaattcacacataaattacaagtaacaaaatca 18322775  T
Q  272 aactataaaaggtgaatatgaacaatgacttaagcaagtaattaaaa 318  Q
    ||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  18322774 aactagaaatggtgaatatgaacaatgacttgagcatgtaattaaaa 18322728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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