View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_55 (Length: 328)
Name: NF1158_low_55
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 103 - 328
Target Start/End: Complemental strand, 42210010 - 42209785
Alignment:
| Q |
103 |
ttctctagacgaaagaaaacaaagaaatgcatttgaagattagacaatacatgttctagggtttgcacatcatgctttattcccgtcacatttttcaagg |
202 |
Q |
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| T |
42210010 |
ttctctagacgaaagaaaacaaagaaatgcatttgaagattagaccatacatgttctagggtttgcacatcatgctttattcccatcacatttttcaagg |
42209911 |
T |
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| Q |
203 |
tcgtcgacactccacatccggtttgtgtggtgaacacatcatcataagcaccaacaagtgggttccccgtgtgattgacttccattgtgtgattgacttc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42209910 |
tcgtcgacactccacatccggtttgtgtggtgaacacatcatcataagcaccaacaagtgggttccccgtgtgattgacttccattgtgtgattgacttc |
42209811 |
T |
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| Q |
303 |
tacctgatctctcatcattttgatca |
328 |
Q |
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| T |
42209810 |
tacctgatctctcatcattttgatca |
42209785 |
T |
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