View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_57 (Length: 324)
Name: NF1158_low_57
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 8126714 - 8126400
Alignment:
| Q |
1 |
aagtattcaaaactcaatgcttagaaagttacaaacnnnnnnnnn-ccaggcaaagttactaaccttgttgtagagttgatttatctgagaaaacaaagt |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8126714 |
aagtattcaaaactcaatgcttaggaagttacaaacttttttttttccaggcaaagttactaaccttgttgtagagttgatttatctgagaaaacaaagt |
8126615 |
T |
|
| Q |
100 |
aaaataaactaaataatttttactaataagcaaacaaatgagagtataatgagtactccattctgttacattaaactatgaaacatgttctttgtaaact |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8126614 |
aaaataaactaaataatttttactaataagcaaacaaatgagagtataatgagtactccattctgttacattaaactatgaaatatgttctttgtaaact |
8126515 |
T |
|
| Q |
200 |
cataggattattacataaagtaaccacctctttgaaatataatttagttcctaaaaaataaaagaggccaattgttac-taccaacctcataatatttta |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8126514 |
cataggattattacataaagtaaccacctctttgaaatataatttagttcctaaaaaataaaagaggccaattgttacttaccaacctcataatatttta |
8126415 |
T |
|
| Q |
299 |
cttttttacattcat |
313 |
Q |
| |
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||||||||||||||| |
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|
| T |
8126414 |
cttttttacattcat |
8126400 |
T |
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