View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_61 (Length: 320)
Name: NF1158_low_61
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 55095059 - 55095311
Alignment:
| Q |
6 |
ctccaacaatatggaattggttggaaacgagcaaggattcaacaagtttgtggaccacaaatttcatgagctggataaggacagagatggtaagctctcc |
105 |
Q |
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| T |
55095059 |
ctccaacattatggaattggttggaaacgagcaaggattcaacaagtttgtggaccacaaatttcatgagctggataaggacagagatggtaagctctcc |
55095158 |
T |
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| Q |
106 |
ttgaaggagcttgagccctagctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatctactatcaggt |
205 |
Q |
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| T |
55095159 |
ttgaaggagcttgagccc--gctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatctactatcaggt |
55095256 |
T |
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| Q |
206 |
aattaacctttctctttttattattatgtaatgtctaattaatgtgtgtgttagt |
260 |
Q |
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| T |
55095257 |
aattaacctttctctttttattattatgtaatgtctaattaatgtgtgtgttagt |
55095311 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 28896877 - 28896807
Alignment:
| Q |
126 |
gctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatcta |
196 |
Q |
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| T |
28896877 |
gctgtttctgatattggttctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatcta |
28896807 |
T |
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