View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_low_64 (Length: 318)
Name: NF1158_low_64
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 55095059 - 55095311
Alignment:
| Q |
6 |
ctccaacaatatggaattggttggaaacgagcaaggattcaacaagtttgtggaccacaaatttcatgagctggataaggacagagatggtaagctctcc |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55095059 |
ctccaacattatggaattggttggaaacgagcaaggattcaacaagtttgtggaccacaaatttcatgagctggataaggacagagatggtaagctctcc |
55095158 |
T |
|
| Q |
106 |
ttgaaggagcttgagcccgctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatctactatcaggtaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55095159 |
ttgaaggagcttgagcccgctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatctactatcaggtaa |
55095258 |
T |
|
| Q |
206 |
ttaacctttctctttttattattatgtaatgtctaattaatgtgtgtgttagt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55095259 |
ttaacctttctctttttattattatgtaatgtctaattaatgtgtgtgttagt |
55095311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 28896877 - 28896807
Alignment:
| Q |
124 |
gctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatcta |
194 |
Q |
| |
|
|||||| |||| || ||| ||||||||||||| |||||| | ||||||| |||||| |||||||||||||| |
|
|
| T |
28896877 |
gctgtttctgatattggttctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatcta |
28896807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University