View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_7 (Length: 593)
Name: NF1158_low_7
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 29 - 580
Target Start/End: Original strand, 16538291 - 16538850
Alignment:
| Q |
29 |
agtttggtcccaatttgcttctgtgtctccattttcatcaactttggttgagaatttgttctttggatcgatccatacgacgccatatggtttgtttgag |
128 |
Q |
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| T |
16538291 |
agtttggtcccaatttgcttctgtgtctccattttcatcaactttggttgagaatttgttctttggatcaatccatacgacgccatatggtttgtttgag |
16538390 |
T |
|
| Q |
129 |
ccgttgcgccagttcacgtttttgagattgtaagctgatgaaagtttcacttcagcttcatagcgtgaagccattttaannnnnnnnnatgtttgtgttg |
228 |
Q |
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| T |
16538391 |
ccgttacgccagttcacgtttttgagattgtaagctgatgaaagtttcacttcagcttcatagcgtgaagccattttaattttttt--atgtttgtgttg |
16538488 |
T |
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| Q |
229 |
aatttgagaatgt--------gatgaaactttggtgtctaaaattggttttataggtgaagagtaagagtggagattggtttattttagtccaaagtttt |
320 |
Q |
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| T |
16538489 |
aatttgagaatgtgattatgtgatgaaactttggtgtctaaaattgattttataggtgaagagtaagagtggagattggtttattttagtccaaagtttt |
16538588 |
T |
|
| Q |
321 |
gtgtttaatcacaaagttgccatttaactaacatggatgacttttcattggtgcaaaatcaaactatcgaatcaaatttcacctaagcaaataaatcaac |
420 |
Q |
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| T |
16538589 |
gtgtttaattacaaagttgccatttaactaacatggatgacttttcattggtgcaaaatcaaactatcgaatcaaatttcacctaagcaaataaatcaac |
16538688 |
T |
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| Q |
421 |
taataaaaaattcattaactcattaatctatgtctcaaagttcagtgaagatttgatcaaaaagagtggagtgaagatcacta--tgtgagttaatcagt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | |
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| T |
16538689 |
taataaaaaattcattaactcattaatctatgtctcaaagttcagtgaagatttgatcaaaaaaagtggagtgaagatcactatgtgtgagttaatcaat |
16538788 |
T |
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| Q |
519 |
tttaattttaaaaaatagcattttttactccttcaaaaaagcttctcaacattattttgcct |
580 |
Q |
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| T |
16538789 |
tttaattttaaaaaatagcattttttactccttcaaaaaagcttctcaacattattttgcct |
16538850 |
T |
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