View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_71 (Length: 306)

Name: NF1158_low_71
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_71
NF1158_low_71
[»] chr5 (1 HSPs)
chr5 (30-306)||(35937009-35937294)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 35937294 - 35937009
Alignment:
Q  30 cattgttgttatccattatttataatccctcttttactgttttgtaaattaatatatagattttttatgaggagtggttacgtttccatccactaatttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35937294 cattgttgttatccattatttataatccctcttttactgttttgtaaattaatatatagattttttatgaggagtggttacgtttccatccactaatttg 35937195  T
Q  130 gtcgcgttggtttggaaattaagtaaaactttgattgtaannnnnnncttgag-------tctatagtattacgaagttggttgggtttgcatagttttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||       |||||||||||||| |||||||||||||||||||||||||    
T  35937194 gtcgcgttggtttggaaattaagtaaaactttgattgtaatttttttcttgagtctatactctatagtattacgtagttggttgggtttgcatagttttt 35937095  T
Q  223 cgttaatgatagctgggcatagttgattgaaaattaatttctttgtaattgttgtttttaac--ttcttttttcgttcaaaattca 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  35937094 cgttaatgatagctgggcatagttgattgaaatttaatttctttgtaattgttgtttttaactttttttttttcgttcaaaattca 35937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University