View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_72 (Length: 305)

Name: NF1158_low_72
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_72
NF1158_low_72
[»] chr2 (3 HSPs)
chr2 (30-293)||(13087409-13087672)
chr2 (89-293)||(13083178-13083382)
chr2 (30-255)||(13093304-13093523)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 13087409 - 13087672
Alignment:
Q  30 atgtgaacatggaaattttacaaaatggaagatcttgaaaaaacgcgacaagggctggatttagatccttggttacctcttgaggatcaaataaaggtcc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13087409 atgtgaacatggaaattttacaaaatggaagatcttgaaaaaacgcgacaagggctggatttagatccttggttacctcttgaggatcaaataaaggtcc 13087508  T
Q  130 catctttttcatattgtttgtcgaatcagaaactcttcccgtttctttgtcgattctttgttgaagagcttcggcaaaataatgaaccacgcgcttaact 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13087509 catctttttcatattgtttgtcgaaacagaaactcttcccgtttctttgtcgattctttgtcgaagagcttcggcaaaataatgaaccacgcgcttaact 13087608  T
Q  230 gggttacctgtcttcgaagataaagactcgatttgtaataacaattttctagcgcgttcatatt 293  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13087609 gggttacctgtcttcgaagataaagactcaatttgtaataacaattttctagcgcgttcatatt 13087672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 13083178 - 13083382
Alignment:
Q  89 tttagatccttggttacctcttgaggatcaaataaaggtcccatctttttcatattgtttgtcgaatcagaaactcttcccgtttctttgtcgattcttt 188  Q
    |||||||||||| | |||||||||||||||||||||| | ||||||||| ||||||||| |  ||| |||||| || ||| |||||||||||||||||||    
T  13083178 tttagatccttgctaacctcttgaggatcaaataaagattccatcttttgcatattgttggatgaaacagaaaatcgtcctgtttctttgtcgattcttt 13083277  T
Q  189 gttgaagagcttcggcaaaataatgaaccacgcgcttaactgggttacctgtcttcgaagataaagactcgatttgtaataacaattttctagcgcgttc 288  Q
    |   ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13083278 gacaaagagcttcagcaaaataatgaaccacacgcttaaccgggttacctgtcttcgaagataaagactcgatttgtgataacaattttctagcgcgttc 13083377  T
Q  289 atatt 293  Q
    |||||    
T  13083378 atatt 13083382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 13093304 - 13093523
Alignment:
Q  30 atgtgaacatggaaattttacaaaatggaagatcttgaaaaaacgcgacaagggctggatttagatccttggttacctcttgaggatcaaataaaggtcc 129  Q
    |||||||||| |||| ||||  ||||||||| ||||  ||||| || | ||||| |||||||||||||||| | ||||||| |||||||||||||| | |    
T  13093304 atgtgaacattgaaactttaacaaatggaagctcttcgaaaaatgcaataagggttggatttagatccttgctaacctcttcaggatcaaataaagtttc 13093403  T
Q  130 catctttttcatattgtttgtcgaatcagaaactcttcccgtttctttgtcgattctttgttgaagagcttcggcaaaataatgaaccacgcgcttaact 229  Q
     ||||||| | ||||||| |    ||  |||||||| || ||||||||||||||||||||   ||| ||||||||||||||||||||||| ||||||||     
T  13093404 tatcttttgcgtattgttag----at--gaaactctacctgtttctttgtcgattctttggaaaagtgcttcggcaaaataatgaaccacacgcttaaca 13093497  T
Q  230 gggttacctgtcttcgaagataaaga 255  Q
    || |||||||||||||||||||||||    
T  13093498 ggattacctgtcttcgaagataaaga 13093523  T

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