View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_74 (Length: 302)
Name: NF1158_low_74
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 290
Target Start/End: Complemental strand, 52583921 - 52583669
Alignment:
| Q |
30 |
ttaagagcatcccacacctgttattacacnnnnnnntccttagcaaagcaaatcaaaatcacggctacaaatatatgtgtatatatatttaaaaatatga |
129 |
Q |
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| T |
52583921 |
ttaagagcatcccacacctgttattacacaaaaa--tccttagcaaagcaaatcaaaatcacggctacaaatatat------atatatttaaaaatatga |
52583830 |
T |
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| Q |
130 |
atgacctcttggtaggacaatgaatgatgttgagcaatgatggaattcaattttctcttgagtttttcaccttttaatctgaaatgcttcaaaggggaat |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583829 |
atgacctcttggtaggacaatgaatgatgtggagcaatgatggaattcaattttctcttgagtttttcaccttttaatctgaaatgcttcaaaggggaat |
52583730 |
T |
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| Q |
230 |
agtaattggcaacatcctcacaagaataagtagaaggagttggatattcagaggcaacagc |
290 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52583729 |
agtaattggcaacatcctcacatgaataagtagaaggagttggatattcagaggcaacagc |
52583669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 37253782 - 37253813
Alignment:
| Q |
257 |
aagtagaaggagttggatattcagaggcaaca |
288 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37253782 |
aagtagaaggagttggatattcagaggcaaca |
37253813 |
T |
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