View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_77 (Length: 295)

Name: NF1158_low_77
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_77
NF1158_low_77
[»] chr3 (8 HSPs)
chr3 (1-241)||(12217500-12217740)
chr3 (1-241)||(7427946-7428177)
chr3 (96-146)||(771956-772006)
chr3 (5-56)||(7443325-7443376)
chr3 (21-56)||(9566175-9566210)
chr3 (21-64)||(13497865-13497908)
chr3 (96-146)||(2455417-2455467)
chr3 (102-142)||(13497787-13497827)
[»] scaffold1004 (2 HSPs)
scaffold1004 (96-190)||(1679-1773)
scaffold1004 (18-59)||(1795-1836)
[»] scaffold0760 (2 HSPs)
scaffold0760 (96-188)||(4176-4268)
scaffold0760 (18-59)||(4290-4331)
[»] chr7 (1 HSPs)
chr7 (21-60)||(27755320-27755359)
[»] chr6 (1 HSPs)
chr6 (96-194)||(24417913-24418011)
[»] chr5 (2 HSPs)
chr5 (19-59)||(20305496-20305536)
chr5 (19-59)||(20309900-20309940)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12217740 - 12217500
Alignment:
Q  1 aagaaagaaatagcgataatcttataattattaatgaaatgatcatacccaaaactatataagggataataatgtactccgtgtgcaatataattcaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12217740 aagaaagaaatagcgataatcttataattattaatgaaatgatcatacccaaaactatataagggataataatgtgctccgtgtgcaatataattcaaag 12217641  T
Q  101 taggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagcacaccgctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12217640 taggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagcacaccgctaa 12217541  T
Q  201 aggtgcgccatatgtacttttgagactgatagggtaagtga 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12217540 aggtgcgccatatgtacttttgagactgatagggtaagtga 12217500  T

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Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7427946 - 7428177
Alignment:
Q  1 aagaaagaaatagcgataatcttataattattaatgaaatgatcatacccaaaactatataagggataataatgtactccgtgtgcaatataattcaaag 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |         ||| ||||||||    
T  7427946 aagaaagaaatagcaataatcttataattattaatgaaatgatcatacccaaaactgtataagggataaaaaggtaccc---------tattattcaaag 7428036  T
Q  101 taggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagcacaccgctaa 200  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7428037 taggcaatatcttgaacattccaatgaaagggttccacaaaacagcagatccttgacgcatggtgagacaaaggatgccggcgcaagagcacaccgctaa 7428136  T
Q  201 aggtgcgccatatgtacttttgagactgatagggtaagtga 241  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  7428137 aggtgcaccatatgtacttttgagactgatagggtaagtga 7428177  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 771956 - 772006
Alignment:
Q  96 caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagc 146  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||||||    
T  771956 caaaggaggcaatatcttgaatttttgaatggaagggttccacaaaacagc 772006  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 7443325 - 7443376
Alignment:
Q  5 aagaaatagcgataatcttataattattaatgaaatgatcatacccaaaact 56  Q
    |||||||||| | ||  |||||||||| ||||||||||||||||||||||||    
T  7443325 aagaaatagcaacaactttataattatcaatgaaatgatcatacccaaaact 7443376  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 9566175 - 9566210
Alignment:
Q  21 cttataattattaatgaaatgatcatacccaaaact 56  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9566175 cttataattatcaatgaaatgatcatacccaaaact 9566210  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 13497908 - 13497865
Alignment:
Q  21 cttataattattaatgaaatgatcatacccaaaactatataagg 64  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||    
T  13497908 cttataattatgaatgaaatgatcatacccaaagctatagaagg 13497865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 2455467 - 2455417
Alignment:
Q  96 caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagc 146  Q
    ||||| |||||||||||||||   || ||||||||||||||||||||||||    
T  2455467 caaaggaggcaatatcttgaattctccaatggaagggttccacaaaacagc 2455417  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 13497827 - 13497787
Alignment:
Q  102 aggcaatatcttgaacattcgaatggaagggttccacaaaa 142  Q
    |||||||||||||||  ||| ||||||||||||||||||||    
T  13497827 aggcaatatcttgaattttctaatggaagggttccacaaaa 13497787  T

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Target: scaffold1004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 1773 - 1679
Alignment:
Q  96 caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagc 190  Q
    ||||| |||||| ||||||||  ||| |||||||||||||||||||||||| |  || | |   ||||||| ||||||||||||| |||||||||    
T  1773 caaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaacagcaggaccattatttatggtgaaacaaaggatgccgtcacaagagc 1679  T

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Target: scaffold1004; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 1836 - 1795
Alignment:
Q  18 aatcttataattattaatgaaatgatcatacccaaaactata 59  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  1836 aatcttataattattaattaaatgatcatacccgaaactata 1795  T

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Target: scaffold0760 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 4268 - 4176
Alignment:
Q  96 caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaaga 188  Q
    ||||| |||||| ||||||||  ||| |||||||||||||||||||||||| |  || | |   ||||||| ||||||||||||| |||||||    
T  4268 caaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaacagcaggaccattatttatggtgaaacaaaggatgccgtcacaaga 4176  T

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Target: scaffold0760; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 4331 - 4290
Alignment:
Q  18 aatcttataattattaatgaaatgatcatacccaaaactata 59  Q
    |||||||||||||||||| |||| ||||||||| ||||||||    
T  4331 aatcttataattattaattaaattatcatacccgaaactata 4290  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 27755359 - 27755320
Alignment:
Q  21 cttataattattaatgaaatgatcatacccaaaactatat 60  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  27755359 cttataatcatcaatgaaatgatcatacccaaaactatat 27755320  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 24417913 - 24418011
Alignment:
Q  96 caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagcacac 194  Q
    ||||| |||||| ||||||||  ||| ||| |||||||||||||||| ||| || || | |  |||||||| |||||||||||||   |||||||||||    
T  24417913 caaaggaggcaagatcttgaatgttctaatcgaagggttccacaaaatagcagaaccgtcagccatggtgaaacaaaggatgccgttgcaagagcacac 24418011  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 20305536 - 20305496
Alignment:
Q  19 atcttataattattaatgaaatgatcatacccaaaactata 59  Q
    ||||||||||||| ||||||| ||||||||||||| |||||    
T  20305536 atcttataattatcaatgaaaggatcatacccaaagctata 20305496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 20309940 - 20309900
Alignment:
Q  19 atcttataattattaatgaaatgatcatacccaaaactata 59  Q
    ||||||||||||| ||||||| ||||||||||||| |||||    
T  20309940 atcttataattatcaatgaaaggatcatacccaaagctata 20309900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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