View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_8 (Length: 587)
Name: NF1158_low_8
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Complemental strand, 36300406 - 36299829
Alignment:
| Q |
7 |
gtatcataggtcacagaatcagggtgcaagtttttcgccatcatctcaataaatttctttttggcttcttctagtttcccaaccttgcaaagtccattaa |
106 |
Q |
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| T |
36300406 |
gtatcataggtcacagaatcagggtgcaagtttttcgccatcatctcaataaatttctttttggcttcttctagtttcccaaccttgcaaagtccattaa |
36300307 |
T |
|
| Q |
107 |
ttaaggttgtataagtgatcacatcaggcacattggtcgatacattgtggattgaattaactaggccagcaactgggttttctttaccaagggaatttgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300306 |
ttaaggttgtataagtgatcacatcaggcacattggtcgatacattgtggattgaattaactaggccagcaactgggttttctttaccaagggaatttgt |
36300207 |
T |
|
| Q |
207 |
tccatcagtccacatctcacttacaacttcacttgctttctccaattctccgtttctacacagaccattgaccacgatattacaggtcacagtatctaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300206 |
tccatcagtccacatctcacttacaacttcacttgctttctccaattctccgtttctacacagaccattgaccacgatattacaggtcacagtatctaac |
36300107 |
T |
|
| Q |
307 |
tgataactcttttcgttcatcttttgcagcatttcctcagcctctgacttcctcccctctttccacaggctattcagcaacgtattgcaagtataagtat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300106 |
tgataactcttttcgttcatcttttgcagcatttcctcagcctctgacttcctcccctctttccacaggctattcagcaacgtattgcaagtataagtat |
36300007 |
T |
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| Q |
407 |
ttggatgacaacctttcctaatcatttcattaagaaccgctttagcttcaaaaaccttccctttgctacaatagccatgtagtagagtagtataagtaac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36300006 |
ttggatgacaacctttcctaatcatttcattaagaatcgctttagcttcaaaaaccttccctttgctacaatagccatgtagtagagtagtataagtaac |
36299907 |
T |
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| Q |
507 |
agtatcagggtaaacaccattactcaccatcaaatccatcaaccttctcgcatccaacatcatatggttcctacacag |
584 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36299906 |
agtatccgggtaaacaccattactcaccatcaaatccatcaaccttctcgcatccaacatcatatggttcctacacag |
36299829 |
T |
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