View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_low_83 (Length: 278)
Name: NF1158_low_83
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_83 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 49919117 - 49919312
Alignment:
| Q |
32 |
ttcctataaagaattattcaatcatcactctcttaaactaactctaaccctttgacagagaaaagtgctagaagcacgtttcctcacctaattaacttcc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49919117 |
ttcctataaagaattattcaatcatcactctcttaaactaactctaaccctttgacagagaaaagtgctagaagcacgtttcctcacctaattaacttcc |
49919216 |
T |
|
| Q |
132 |
gaaccgccaggttaactggttttcgccgtctcttctcggttgtaggagccttcttttttaatcatggcatagccaacctcaaaactcaggtgatgt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49919217 |
gaaccgccaggttaactggttttcgccgtctcttctcggttgtaggagccttcttttttaatcatggcatagccaacctcaaaactcaggtgatgt |
49919312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University