View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_low_90 (Length: 252)
Name: NF1158_low_90
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 35936537 - 35936387
Alignment:
| Q |
96 |
ttaaattaattaaggcgaaagttatttttaattcaaattagtccaccaaaattaacatcaaagaaaatcgaatatcttgagagaaacacattctgaagtc |
195 |
Q |
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| T |
35936537 |
ttaaattaattaaggggaaagttatttttaattcaaattaacccaccaaaattaacatcaaagaaaatcgaatatcttaagagaaacacattctgaagtc |
35936438 |
T |
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| Q |
196 |
caaaaccaacacaacaagattgtgaactaacgctcgatgaacctatgatac |
246 |
Q |
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| T |
35936437 |
caaaaccaacacaacaagattgtgaactaacgctcgatgaacctttgatac |
35936387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35936932 - 35936829
Alignment:
| Q |
1 |
actatgttcatgggttcatatgattgctgtttttaatctttataaagaacttttcaaataaaaaattattaaaatgacatcacattactactagattaaa |
100 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35936932 |
actatgttcatgggttcatgtgattgcagtttttaatctttataaagaacttttcaaataaaaaattattaaaatgacatcacattactactagattaaa |
35936833 |
T |
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| Q |
101 |
ttaa |
104 |
Q |
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|||| |
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| T |
35936832 |
ttaa |
35936829 |
T |
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