View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_low_92 (Length: 251)

Name: NF1158_low_92
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_low_92
NF1158_low_92
[»] chr3 (7 HSPs)
chr3 (1-245)||(12217756-12218000)
chr3 (1-245)||(7427683-7427930)
chr3 (80-172)||(2456049-2456141)
chr3 (136-172)||(2474970-2475006)
chr3 (136-172)||(2491946-2491982)
chr3 (141-172)||(754760-754791)
chr3 (135-172)||(1437862-1437899)
[»] chr7 (1 HSPs)
chr7 (136-172)||(24723212-24723248)
[»] chr2 (1 HSPs)
chr2 (134-170)||(7160913-7160949)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 12217756 - 12218000
Alignment:
Q  1 aactagagtttacactctaggtacagattcttggagaaaaatacaagactttcgaaatttatccttgtatcgtccatcaggagtatttgtgggtggtgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  12217756 aactagagtttacactctaggtacagattcttggagaaaaatacaagacttcccaaatttatccttgtatcgtccatcaggagtatttgtgggtggtgcc 12217855  T
Q  101 gttaattggttggtttatgatggttttcgtagttttattgtttctcttgatttagagaaggagtcatatcaatatatttcgccgcctgttttggagatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12217856 gttaattggttggtttatgatggttttcgtagttttattgtttctcttgatttagagaaggagtcatatcaatatatttcgccgcctgttttggagatga 12217955  T
Q  201 gtttgtttactttgggggtattgaaggattgcttgttcttttctg 245  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  12217956 gtttgtttactttgggggttttgaaggattgcttgttattttctg 12218000  T

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Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 7427930 - 7427683
Alignment:
Q  1 aactagagtttacactctaggtacagattcttggagaaaaatacaagactttcgaaatttatccttgtatcgtccatcaggagtatttgtgggtggtgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||| |||| ||     
T  7427930 aactagagtttacactctaggtacagattcttggagaaaaatacaagactttccacatttatccttgtatcatccatcgggagtatttgtgagtggggct 7427831  T
Q  101 gttaattggttggtttatgatggttttcgtagttt---tattgtttctcttgatttagagaaggagtcatatcaatatatttcgccgcctgttttggaga 197  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  7427830 gttaattggttggtttatgatggttttcgtagttttattattgtttctcttgatttagagaaggagtcatatcaatatatttcgcagcctgtttcggaaa 7427731  T
Q  198 tgagtttgtttactttgggggtattgaaggattgcttgttcttttctg 245  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7427730 tgagtttgtatactttgggggttttgaaggattgcttgttcttttctg 7427683  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 2456049 - 2456141
Alignment:
Q  80 ggagtatttgtgggtggtgccgttaattggttggtttatgatggttttcgtagttttattgtttctcttgatttagagaaggagtcatatcaa 172  Q
    |||||||||||| || |  | ||||||||||||   ||||||  ||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  2456049 ggagtatttgtgagtagcactgttaattggttgacatatgatcttttgcgtatttttattgtttctcttgatttggagaaggagtcatatcaa 2456141  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 2474970 - 2475006
Alignment:
Q  136 tattgtttctcttgatttagagaaggagtcatatcaa 172  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2474970 tattctttctcttgatttagagaaggagtcatatcaa 2475006  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 2491946 - 2491982
Alignment:
Q  136 tattgtttctcttgatttagagaaggagtcatatcaa 172  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2491946 tattctttctcttgatttagagaaggagtcatatcaa 2491982  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 172
Target Start/End: Complemental strand, 754791 - 754760
Alignment:
Q  141 tttctcttgatttagagaaggagtcatatcaa 172  Q
    ||||||||||||||||||||||||||||||||    
T  754791 tttctcttgatttagagaaggagtcatatcaa 754760  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 1437862 - 1437899
Alignment:
Q  135 ttattgtttctcttgatttagagaaggagtcatatcaa 172  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  1437862 ttattgtttctcttgatttagagaaggagacgtatcaa 1437899  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 24723212 - 24723248
Alignment:
Q  136 tattgtttctcttgatttagagaaggagtcatatcaa 172  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaa 24723248  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 7160949 - 7160913
Alignment:
Q  134 tttattgtttctcttgatttagagaaggagtcatatc 170  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  7160949 tttattgtttctcttgatttggagaaggagtcttatc 7160913  T

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