View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11590_high_4 (Length: 265)
Name: NF11590_high_4
Description: NF11590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11590_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 41711856 - 41711608
Alignment:
| Q |
1 |
tcacaacagtaaagcaagcaacaatcaatcgaaaagcatggttattaagaagcataagaagaggtaccaggatgtacttgagatcggtcgtgctgatatc |
100 |
Q |
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| T |
41711856 |
tcacaacagtaaagcaagcaacaatcaatcgaaaagcatggttattaagaagcataagaagaggtaccaggatgtacttgagatcggttgtgctgatatc |
41711757 |
T |
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| Q |
101 |
ctctttggtttcattagcagagaacaaaccaagcctattaaccatgttttcgcatttattcagagcctcacatccctttttcacaagctcctgaacaaat |
200 |
Q |
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| T |
41711756 |
ctctttggtttcattagcagagaacaaaccaagcctattaaccatgttttcgcatttattcagagcctcacatccctttttcacaagctcctgaacaaat |
41711657 |
T |
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| Q |
201 |
tacacacaactcaattatgaaacagaaacatgaaaacaaatgaagaaga |
249 |
Q |
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| T |
41711656 |
tacacacaacttaattatgaaacagaaacatgaaaacaaatgaagaaga |
41711608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 55017342 - 55017313
Alignment:
| Q |
99 |
tcctctttggtttcattagcagagaacaaa |
128 |
Q |
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| T |
55017342 |
tcctctttggtttcattagcagagaacaaa |
55017313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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